LOC110531658 (LOC106577765)


Basic Information

Item Value
gene id LOC110531658
gene name LOC106577765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18250932 ~ 18256403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614977.2
CCAGGATGGAACCCACAGACATCTTGCTGTTTGTTTCCCTGTAGTTAGCTAGTCAGTAAGACATCCGACAGACACAGAATGCTCTATTGTTCCATGATCATCTTCATCAaacccatcatcatcaccaagAGATTGTGATTGATATTATGTCAGgcaCACAGACTTCTCTGGTTGCCCTGCTGTGGCTGTGGGGAGCGTGGAtttcccctgtcctgtcctcgtGCACCACGGGCCGGCCAGCAGAGTGCAAGGCTGCGCTGTCAGCTCCGGGTACCAACCTGGCGGGCGAGGGTTTTGACGTCGTCACCATGGAACGCAAGCAGGCCTATGTCATCGACGTGGACACCTGGAGGAAGAGCGATAACGGGACCTGTACCCTCTGTGTTAACCCTTTCATGGAAGGCCAGACTCAGAGGCTGCCTGCGGCTGTGGTGGACTGGCGTCCCTCGCAGAAGTGCAACATGAAGTTAGCCAGTATGGTCTACGACTCCAGCGAGGCGTTTGTGAGCAGCAGCCAGACAGAGGTAGATGTCAGTTGGAAGATTGGTCTGGACATTATGACCCCCCAGGCTAAGGGGTCGGTCATGGTGGGGGGCACCCACTCCAGAGCTGCCAAAACGGTGATGAGCCAGTCGAAGAAGGACAAGTACAGCTTCATCAAACAGGATATACACTGCTCTTATTACAGATACCGCCTGCTAGATGACCCTCCCCTGCACCCTGAGTTCTCTCGCTCCCTGGGCCTCCTGCCCCCCCTCTACACAGCCCAGACCAAGGTTGAATACAGATATTTTCTTGCCAACTTTGGCACCCACTTCATCAAGAAGGTTCTCCTGGGGGGGCGGGTGAAGAGCGTGACCTCCCTGCGAGTGTGTCAGGCGGCCCTAAGTGGCTACAACGAGAACGAGGTCAAGGACTGTCTTGAGGCTGAGGCCTCCGTCGCCACCGTTACCGGAACAGCCGAAGTAAAGACAGAGACCAAGTTCTGCAAGGCGGATCTTCAGAAACGTGACATCAAGGACCGCTTCAGCAGCACCTTCCAAGAGAGGTTTACCGAGGTGGTGGGGGGACAGACGGACGGGACACCAGACTTGCTCTTCTCCCAAACGGGTGGAAACTCCAAGGCCTTCGCTGATTGGGCGAGCAGCCTGAAGACCATCCCTGACGTCATCAACTACTCCCTTCACCCCCTCCACCTATTGGTGAAGCAGGCAAGTAAGAGGGCTGGGCTGAAGAAGGCTGTGGAGGACTACATCCTGGAACATGCTCTGGTCAAGCGCTGCTCTGGGAAGTGCAAGGGAGGCTCCAGCTCCAGTGCCCACGACTCCTGCCAGTGTGTGTGCCAGGCCAGCAAGGAGATGACCAGCCAGTGCTGCCCGCAGGAGAAGGGCCAGGCCCGCCTTACCGTCACTGTGAAGAACGCCAAGGGCCTCTGGGGGGACACCACCACTGAGACCGACGGCTTCGTCAAGGTGTCAATGGATGGAGCAGCCATgcagaccagggtgatctacaacaacaacaaccccgCCTGGAACAAAGTATTAGACTTCGGTTTTGTCAAGCTCTCCCTGGCCAGCGAGCTGAAGTTTGCTGTGTATGATGAAGACAAAACCTGGTACAAGTCTTGGAACGACCTTCTGGGGGAGTGCAGCGTCCGGCTGGGTTCTCACAACAACATGTGTCCCATGAATCATGGAACCCTGTACTTTTCCTACAAGGTTGACTGTGCCACAGGACTTGGGGGCTCCACCTGTGGGGAGTATGTCCCCTCTGGGATGAACTCTGACCTCTCTAACCTCTACACCTCCCGCAACTCCCTCAACATGACCCAGGATCTGCTGGCTCACATCCGGATGGGCCGGCCCCTAGGAGACCCCCTGGCTTTCGTGGTTAAGCAGAAGGCTAATGGTCATGGAAAAAACACATGAATCTCACATCGCATGTGAGGGATAATGGTTACCCTTGTCTCCTTGCTCTCAGTAAGCTGTGATCAAAACCGCTATGCTATGCACTATAAACCTTATCCTGGCCTATCTAACTTTAAGGCATACGATTTCTAACCTATTGTTCTGAACCATAAATCATTTtactttggtaaaaaaaaaaatcatcatcaacaAAAACATCCAAAGTGCTGTATATCCTATGTATTTCTGAAGGTAATGGTTTATACACATGTTTATATGTTTATTGAACAGGGGCCATGTACAATTATAAAATTAAATATcatgcattcaaattgacatttATGTTTTCATTCTCTCATGACTGTGCCATGTTGTTTGTGCTACCACTGCAATAAAAAGCTCCTTGATTTGAAATA

Function

NR:

description
perforin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614977.2 True 2326 mRNA 0.52 7 18250932 18256403

Neighbor

gene id symbol gene type direction distance location
LOC110531656 pop7 coding upstream 60490 18187738 ~ 18190442 (+)
LOC110531644 mettl3 coding upstream 904681 17339272 ~ 17346251 (+)
LOC110532942 LOC106577806 coding upstream 945303 17292470 ~ 17305629 (+)
LOC118966009 NA coding upstream 981898 17266030 ~ 17269034 (+)
LOC118966167 NA coding upstream 985515 17254266 ~ 17265417 (+)
LOC110531660 LOC106608810 coding downstream 44965 18301368 ~ 18320759 (+)
LOC110531663 LOC106577697 coding downstream 384252 18640655 ~ 18648675 (+)
LOC110531664 LOC106577696 coding downstream 399774 18656177 ~ 18673318 (+)
LOC110531665 LOC106577695 coding downstream 461962 18718365 ~ 18833482 (+)
LOC118966177 NA coding downstream 588873 18845276 ~ 18846593 (+)
G777235 NA non-coding upstream 23176 18227535 ~ 18227756 (+)
G777206 NA non-coding upstream 76080 18174555 ~ 18174852 (+)
G777201 LOC106577760 non-coding upstream 80447 18169946 ~ 18170485 (+)
G777180 NA non-coding upstream 114282 18136247 ~ 18136650 (+)
G777179 NA non-coding upstream 120181 18130372 ~ 18130751 (+)
G777258 LOC106577766 non-coding downstream 4248 18260651 ~ 18287707 (+)
G777283 NA non-coding downstream 67001 18323404 ~ 18323939 (+)
G777285 NA non-coding downstream 72102 18328505 ~ 18328795 (+)
G777295 NA non-coding downstream 98877 18355280 ~ 18356183 (+)
G777434 NA non-coding downstream 319875 18576278 ~ 18586409 (+)
G777165 NA other upstream 142450 18108019 ~ 18108482 (+)
G777113 NA other upstream 245264 18003267 ~ 18005668 (+)
G777111 NA other upstream 248750 18001889 ~ 18002182 (+)
G776818 LOC106600668 other upstream 591787 17658197 ~ 17659145 (+)
G776487 NA other upstream 856811 17380625 ~ 17394121 (+)
G777396 NA other downstream 243211 18499614 ~ 18500018 (+)
LOC110531694 LOC106577663 other downstream 1561285 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 1619865 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1753113 20009183 ~ 20090543 (+)

Expression


Co-expression Network