LOC110531664 (LOC106577696)


Basic Information

Item Value
gene id LOC110531664
gene name LOC106577696
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18656177 ~ 18673318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614983.2
GACCGAGCATCGGGAAAACCTGCAGTAAACTACAGTGACACAAATGTAATCATAGGCTTCAAATCAGCTTTGTAGTTTTGGGGCGATATGACAAACACTACTAATCCCAAGATTCTCAGTGCAGCGCCGTGATTTCCGGGTTCTGTGTTGCTAGGGGGAAGGTGGCGCAGAGGACCTGTTGGAAATGACGGTAGAAGAAGTCGGATTTCAATATAAAGTCCAAAACAGTAAACCTGGAAGATAGCAAAGAAACTTCACCAGACCTGCGTGCTAaggGGTGTGACTCACCATGGAGTCCCTGATGAGTGCGGTGGCCCCCCGGACCCCGGCCCTGTTGAAGAAGGCCTCTGAGGTGGACTTCCGGTCGGGGGCCACGCTGGAGCAGCTGTCGGCCCAGGTGTCTGAGCTGGTCACCCTGGAGCAGGGGGACTTCGGGGACCAGCTCGCCCTCGAGGTCCACACGGCCAAAGACTTCATCTTCAACATGCTGGGCCTTGTACAGAAGGTGGACCAGCGTCTCCCGGTGGCCAATGAGTACCTGCTCCTGTCTGGGGGTGCCAGGGAGGGGGTTCTGGACCTCAACCCAGAGGAGCTGGGGGACTACGCTAAGGGGGCCGATTTCGACCTGGACTTCACCCTCTTGGTGCCCGCCCTCAAGCTCCATGATCGCAACCAGCCGGTCACCCTGGACATGCGCCAGTCGCCCCCCTGCCACTCCTGGCTCTCCCTGCGGCTCTGCGACCCCAACACCCAGGCAAGATGGAGGATCTGCTGCCAGGAGGAGACAGACTCACCCCCcgacgacgatgatgatgatgaggaagagAAAAGGGAAATGGGTCACAAAGCCTCTGGTGCCGTCCCCCCCTCACTCTACTCGCCCCACCAGTCTCTGGATGGCTGCTACATGTCCCCGGCGCTGGTGGCTGACTGGTTCTGGGGAGTGGTGGGTGAGGCGGTGGATGAGCTGAGGCGTTCCCCCAAGAGAGGCATCCCCGTCCCAGAGAGGCTGGAACGCAACGGGCCCCTGACCACCCTCATCCTCCAGGCGGGCTCCAGCCGGGTGCTCTATGACCTGCTGCCAGTGGTGTCCTTCCGGGGCTGGCCCGCCGTGGCCCAGGGCTGGCTGACGGCCAACCACTTCTGGGACGGGAAGATCACAGAGGAGGAGGCCATCTCTGGGTTCTACCTGCTGCCCTGCCCGGCTCCGCTGGGGGGGAGGCCCGACCGGGAGTGGAGGCTGGCCTTCTCACGCAGCGAGGTGCAGCTGAAGAAGTGCATCCCGTACCCCATGGCCCAGGCCTTCCAGGCTGCCAAGGCTGTCCTCTCCCGCCTCCTGGCTCGCCCCCGCACTGGCCTCAGCCCCTACCACCTCCGCACCCTCCTCTTCTGGGCCTGTGACCGCCTACCGCCCGCCTACCTCTCCTCGCCTGACCCAGAAACCCCTGCCCGCCTCCTCCTGGGCCTCCTGGATGATCTGGCCCACTGCATCCTGGGTAAGAACTGTCCCAACTACTTTCTGCCCCAGTGCAACATGCTGGAACACCTGTCGGACAGCCAAGCCCTGCTGGTGGCCCGGAAGCTGGCCCATGTCCGATCTGACCCGACCGAGCACCTACGTGCGGCCCTGGACCAGGCCAGACAGGCGAGCCAGCTGAAGAGGGAAGCGGCGAGCGCTACCAACGGGCACGGAGGGTCGCCCAGGCAAGGTTACCCAGCCAGCGGCATCATCTCGCCCTCGGACGACAAACTGGCTGCCAGGCTGCAGCAGCTGGTGACCGAGAACCCCGGGAAGTCGATTTCTGTTTTTCTCAACCCCGATGATGTCACAAGGCCGCACTTCCGCATCGATGACAAGTTCTACTGACCTGAGAGTAATGGTGTGCTATCAACACACACTCTCTTCAAAACACATGTAAAACGGCGAGTCAACTAGGAAGGCTCGAGAGTCAAAACACTACAGAGCCTCACTGCTCTCCTATCCCACCCCCTCCTGGAGGCTAACGACAATGATGCTAACGACGCTGCTGAACTATGACACTACCAAAAACACCTTTGCACTCTCCCAGGAGCAGGAGGCTGACCCTAGAGAGCCCTAGGCTAGAGAAACCAACACTCTTCTATCCATTTAGCAGTGAGTGATGTCATAAAGAGACCTCACCACAGGAAAAATGCTCGTTGAGTTACCACGGCGACTGATGCTCTTTTATGAGCTTGCTGTaaggagatgttttttttttttttttta
>TU885868
GGGGAAGGTGGCGCAGAGGACCTGTTGGAAATGACGGTAGAAGAAGTCGGATTTCAATATAAAGTCCAAAACAGTAAACCTGGAAGATAGCAAAGAAACTTCACCAGACCTGCGTGCTAaggGGTGTGACTCACCATGGAGTCCCTGATGAGTGCGGTGGCCCCCCGGACCCCGGCCCTGTTGAAGAAGGCCTCTGAGGTGGACTTCCGGTCGGGGGCCACGCTGGAGCAGCTGTCGGCCCAGGTGTCTGAGCTGGTCACCCTGGAGCAGGGGGACTTCGGGGACCAGCTCGCCCTCGAGGTCCACACGGCCAAAGACTTCATCTTCAACATGCTGGGTAAGACTCACCCACAGGCAGGATTTGGGTTAATACATTTTTGATTCACTACTGATATAGACAGCATTATTATAAGCTGGGTGCttcgaaccctgaatgctgattggcggACA

Function

NR:

description
protein MB21D2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614983.2 False 2248 mRNA 0.60 6 18656177 18673318
TU885868 True 450 TUCP 0.55 2 18656331 18657574

Neighbor

gene id symbol gene type direction distance location
LOC110531663 LOC106577697 coding upstream 7502 18640655 ~ 18648675 (+)
LOC110531660 LOC106608810 coding upstream 335418 18301368 ~ 18320759 (+)
LOC110531658 LOC106577765 coding upstream 399774 18250932 ~ 18256403 (+)
LOC110531656 pop7 coding upstream 465735 18187738 ~ 18190442 (+)
LOC110531644 mettl3 coding upstream 1309926 17339272 ~ 17346251 (+)
LOC110531665 LOC106577695 coding downstream 45047 18718365 ~ 18833482 (+)
LOC118966177 NA coding downstream 171958 18845276 ~ 18846593 (+)
chrnb1l LOC106577752 coding downstream 238432 18911750 ~ 18928236 (+)
LOC110531666 LOC106577694 coding downstream 265277 18938595 ~ 18950268 (+)
LOC110531667 NA coding downstream 288019 18961337 ~ 18963380 (+)
G777474 NA non-coding upstream 22457 18633270 ~ 18633720 (+)
G777471 NA non-coding upstream 24815 18631154 ~ 18631362 (+)
G777469 NA non-coding upstream 27900 18628074 ~ 18628277 (+)
G777464 NA non-coding upstream 35555 18620385 ~ 18620622 (+)
G777455 NA non-coding upstream 46574 18609202 ~ 18609603 (+)
G777587 NA non-coding downstream 123380 18796698 ~ 18796914 (+)
G777591 NA non-coding downstream 126793 18800111 ~ 18800372 (+)
G777596 NA non-coding downstream 133692 18807010 ~ 18807243 (+)
G777599 NA non-coding downstream 136869 18810187 ~ 18810457 (+)
G777601 NA non-coding downstream 137578 18810896 ~ 18811237 (+)
G777396 NA other upstream 156159 18499614 ~ 18500018 (+)
G777165 NA other upstream 547695 18108019 ~ 18108482 (+)
G777113 NA other upstream 650509 18003267 ~ 18005668 (+)
G777111 NA other upstream 653995 18001889 ~ 18002182 (+)
G776818 LOC106600668 other upstream 997032 17658197 ~ 17659145 (+)
LOC110531694 LOC106577663 other downstream 1144370 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 1202950 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1336198 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1366293 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1406118 20079382 ~ 20082084 (+)
G777498 NA non-coding downstream 6169 18663743 ~ 18722039 (+)

Expression


Co-expression Network