LOC118966177


Basic Information

Item Value
gene id LOC118966177
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18845276 ~ 18846593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053441.1
TAAAGAGAGAGGGCTGCTCTGATTGGACAGAGTGAAGCTGTATTTCTCTGTCCACTCGCTTCATAAATTCACCCGATCACTTTTCCAAGCATGTTCGCGTTCTGATCGTTTAGATGGCTGCAGCTTGTTACTGTAATAAATCACACGGCGAGGATGTTTGCTATCAAGCTATCAATGTGTTTAACATCTAACAAGAGGGAAAAACATGAAACGCTGCTGCACATTCTGACTGAGTGAAAGCAAACTtgaggacacacagacacacacacacacacacccacccctccaCACGCTGCTCCTAATCTGCAGCTTTTTTGCAGTAAGAACGTGCAGGGAGGTATTTTGCATATTAGGCTTATTCAAAAACAAGTATCACAAGTATCATCTGAGCCGATCCGACGGCCAACTGTCAACTTACGGATACGAATGCGAGGATGGCCATGTCGGCACACCCCTACTCAATCCCCTTCTCgtccaggatGTCCACCTCTGATGTAGGTGTAGGTCTAGAACACCATGGTGCAGTTCTGCCGGTCAACGGGAAGTACGCCACCTGGACACAGgaaacaggaagaggagggggtgttACGACAAAGAAGGGGCTGCAGAAGAGGGCAAGGGGAGACCAGGTCACCCTCCCACTACTATAAGCCTGGATAGCCACACGGAGGGCCACATCAAACACACCATCATTACTGCAGaacgagagaaagggagggaggggagagggatggagggagggaagggaggaggagagagagtgcagagagagagattgagaaaaagagagagttaGAAACAGAAGAATACCATTCTCACTGTACATGAGAGCTATTCTGTCTATAGGACTGTACACTATTAGAAATAAGCTTCTATCTAAGTACCTAAATGGGTTATTTGGCTGTTCCCATTtaataacccttttggttccaggcagaaccattttgagttccatgtagaaccctttcttcAGAGagttctacatgaaacccaaagggttctcctatgtggaCAGAAGATTAAggttctctagtgtcc
>TU886065
CTGCAGGTCCACCTCTGATGTAGGTGTAGGTCTAGAACACCATGGTGCAGTTCTGCCGGTCAACGGGAAGTACGCCACCTGGACACAGgaaacaggaagaggagggggtgttACGACAAAGAAGGGGCTGCAGAAGAGGGCAAGGGGAGACCAGGTCACCCTCCCACTACTATAAGCCTGGATAGCCACACGGAGGGCCACATCAAACACACCATCATTACTGCAGaacgagagaaaggg

Function

NR:

description
PREDICTED: acetylcholine receptor subunit beta-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053441.1 False 1038 mRNA 0.47 3 18845276 18846593
TU886065 True 240 lncRNA 0.55 2 18845831 18846270

Neighbor

gene id symbol gene type direction distance location
LOC110531665 LOC106577695 coding upstream 11794 18718365 ~ 18833482 (+)
LOC110531664 LOC106577696 coding upstream 171958 18656177 ~ 18673318 (+)
LOC110531663 LOC106577697 coding upstream 196601 18640655 ~ 18648675 (+)
LOC110531660 LOC106608810 coding upstream 524517 18301368 ~ 18320759 (+)
LOC110531658 LOC106577765 coding upstream 588873 18250932 ~ 18256403 (+)
chrnb1l LOC106577752 coding downstream 65157 18911750 ~ 18928236 (+)
LOC110531666 LOC106577694 coding downstream 92002 18938595 ~ 18950268 (+)
LOC110531667 NA coding downstream 114744 18961337 ~ 18963380 (+)
LOC110531669 LOC106577692 coding downstream 130401 18976994 ~ 18982679 (+)
LOC110531668 LOC106577692 coding downstream 136690 18983283 ~ 18987728 (+)
G777603 NA non-coding upstream 31321 18813725 ~ 18813955 (+)
G777601 NA non-coding upstream 34039 18810896 ~ 18811237 (+)
G777599 NA non-coding upstream 34819 18810187 ~ 18810457 (+)
G777596 NA non-coding upstream 38033 18807010 ~ 18807243 (+)
G777591 NA non-coding upstream 44904 18800111 ~ 18800372 (+)
G777643 NA non-coding downstream 28500 18875093 ~ 18875295 (+)
G777658 NA non-coding downstream 62024 18908617 ~ 18911505 (+)
G777749 NA non-coding downstream 204219 19050812 ~ 19051046 (+)
G777752 NA non-coding downstream 209441 19056034 ~ 19056422 (+)
G777396 NA other upstream 345258 18499614 ~ 18500018 (+)
G777165 NA other upstream 736794 18108019 ~ 18108482 (+)
G777113 NA other upstream 839608 18003267 ~ 18005668 (+)
G777111 NA other upstream 843094 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 971095 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 1029675 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1162923 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1193018 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1232843 20079382 ~ 20082084 (+)

Expression


Co-expression Network