chrnb1l (LOC106577752)


Basic Information

Item Value
gene id chrnb1l
gene name LOC106577752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18911750 ~ 18928236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987505.1
gagagagagagagagagagagagagagagagagataaactgtTCACTCGCACAAGCAGGACTCTGCCTGTAAGGTTGGCATAACTAAATGGTGGTGTAGCGGCTGTGTTGGCCTGTTTAATACTCTGGACCTGGATGCGTGTGTGGGGGCGTGTGTTAACGATTAGCGACTTCGTTGGACTATCCAGATTCCTGCTAAAGGTGGTTAGAGTGCCCACCGATTGGAAGAGTGGGTACAGTTGGTGGGTAAGGTCGGTACGCCCCTACGATACAGTTTGGTTGGTTTGTTGGTTGCCAGGTGAAGGGCAAGACGGTGTGGGTCCTTGTGGTCTGAGGTGTTTTGAGGATGACTATGTGGATGAAGATGGGAGAGAGGATGAACATTTTCCTGTGGGTGGTGTCTGCTTGCCTCTGCCTCACTCTCACTGgtGCGTCAGAGTCAGAGAGGCTGCTTCACCAGAAGATCTTCCAGAACTACAACCTGAAGGTCCGGCCAGCTAAACAATGGGAGGAGAAAGTACAGGTCCGAGTGGGGATGACCCTCTCCCAGCTCGTCAGCCTGAATGAGAAGAACGAGGAGATGACAACCAATGTGTTCATGAATATGgcgTGGACTGACTACAGATTATCATGGAATCCAGAGGATTACGATAATATAGATGTCCTCAGGATTCCTCCCAACAAGGTGTGGCGGCCAGACATATACCTCATCAACAATAATGATGGTCAGTTTGACGTGGCTCTGTATGTCAACGTGCTGGTCTACAGTGATGGGACAGTCAACTGGCTGCCTCCTGCTATCTACCGCAGCAGCTGCCCTATCGAGGTGGCGTACTTTCCATTTGACTGGCAGAACTGCACCATGGTGTTCCGCTCCTACACCTACGACTCATCAGAGGTGGACCTGCAGTACGCCCTggatgagaaaggagaggagatacATGAGATTATCATAGATGAGAACACCTTCACTGAGAACGGGGAGTGGGCGATCTGCCATAAGCCCAGCAGAAAGAACGTGAACCCTGAGGACCTGTATGAAGACATCACCTTCTATCTCATCATCGAGAGGAAGCCTCTCTTCTACGTCGTTAACATCATCGTGCCCTGCATCCTCACCATGGTCCTGGCCATCTTTGTCTTCTATCTACCACCTGGCGCATgTGAGAAGATGaccctgtctatctctgtcctcATCGCTCTCACTGTGTTCATGCTGCTGCTGGCTGACAAGGTCCCCGAGACCTCCCTGGCCATCCCTCTTATTGTTAACTATGTCATGTTCACCATGATCCTGGTCACCTTCTCAGTCATCCTCAGTGTGGTGGTCCTCAACTTGCACCATCGGACCCCCTACACACACATCATGCCCCCTTGGGTGCGCAAGGTGTTCATCCACTTCCTGCCGAAGTACCTGGGCATGCAGAGGCCCCACCCAGAGGAGCCTTTGGAGGAGGAGCCTAGTGATGATACACCCCTCCAGAGCATCGACGGACGCAGGCCGGGGGGAGAGTACTTCTTCAGGAAGATCAACCCTGAACTGGTCCTACCCTGGAGAGGCAGgaGTGAGAGTACAGTACAGCTCCAGAGGTTCTTTGACAGTGACAACTACTGTCTGATCCTCCCCCCGGACCTCAAGTCAGCCATCGCTGCCGTCACATACATGGCTGAGCAGCTGAAGAAGCAGGATGGCTCCGACTCGGAGACAGGAGACTGGCAGTACATAGCCATCGTGGTGGACAGGCTGTTCCTGTGGCTGTTTGTCATCATCACTACTCTGGGGACTCTGGCCATGTTCATGGACGCCAGACTCAACTACACACCAGACGAGCCTTTCCCCCTGAGGCCGTAGTCCATTCACACACCCCAGCACAGCCACTCTGGTGCTCACAAGGGATTACAAGAACTACACTTCCCATAATTCCATAGCTGAGTACCAACTTCTTTGATATGACGAGGACCAGAGGTTTCCCCAGGTAAAACTCAGTGTTCTATGTATAATGTATTGTTAGGGATGACACAGTACCATATACTTTGATATGAATAGTCCCCTTCTCTAAACCTACTCCTTTATGAAAGCAATATAATCTAATATAGACGGTTTATAGATTAGCATCTATTTAAATAGGAcaaatatattatttatatacagtaccagtcaaaagtgtggacacacctactcattca
>XM_036987506.1
gagagagagagagagagagagagagagagagagataaactgtTCACTCGCACAAGCAGGACTCTGCCTGTAAGGTTGGCATAACTAAATGGTGGTGTAGCGGCTGTGTTGGCCTGTTTAATACTCTGGACCTGGATGCGTGTGTGGGGGCGTGTGTTAACGATTAGCGACTTCGTTGGACTATCCAGATTCCTGCTAAAGGTGGTTAGAGTGCCCACCGATTGGAAGAGTGGGTACAGTTGGTGGGTAAGgtGCGTCAGAGTCAGAGAGGCTGCTTCACCAGAAGATCTTCCAGAACTACAACCTGAAGGTCCGGCCAGCTAAACAATGGGAGGAGAAAGTACAGGTCCGAGTGGGGATGACCCTCTCCCAGCTCGTCAGCCTGAATGAGAAGAACGAGGAGATGACAACCAATGTGTTCATGAATATGgcgTGGACTGACTACAGATTATCATGGAATCCAGAGGATTACGATAATATAGATGTCCTCAGGATTCCTCCCAACAAGGTGTGGCGGCCAGACATATACCTCATCAACAATAATGATGGTCAGTTTGACGTGGCTCTGTATGTCAACGTGCTGGTCTACAGTGATGGGACAGTCAACTGGCTGCCTCCTGCTATCTACCGCAGCAGCTGCCCTATCGAGGTGGCGTACTTTCCATTTGACTGGCAGAACTGCACCATGGTGTTCCGCTCCTACACCTACGACTCATCAGAGGTGGACCTGCAGTACGCCCTggatgagaaaggagaggagatacATGAGATTATCATAGATGAGAACACCTTCACTGAGAACGGGGAGTGGGCGATCTGCCATAAGCCCAGCAGAAAGAACGTGAACCCTGAGGACCTGTATGAAGACATCACCTTCTATCTCATCATCGAGAGGAAGCCTCTCTTCTACGTCGTTAACATCATCGTGCCCTGCATCCTCACCATGGTCCTGGCCATCTTTGTCTTCTATCTACCACCTGGCGCATgTGAGAAGATGaccctgtctatctctgtcctcATCGCTCTCACTGTGTTCATGCTGCTGCTGGCTGACAAGGTCCCCGAGACCTCCCTGGCCATCCCTCTTATTGTTAACTATGTCATGTTCACCATGATCCTGGTCACCTTCTCAGTCATCCTCAGTGTGGTGGTCCTCAACTTGCACCATCGGACCCCCTACACACACATCATGCCCCCTTGGGTGCGCAAGGTGTTCATCCACTTCCTGCCGAAGTACCTGGGCATGCAGAGGCCCCACCCAGAGGAGCCTTTGGAGGAGGAGCCTAGTGATGATACACCCCTCCAGAGCATCGACGGACGCAGGCCGGGGGGAGAGTACTTCTTCAGGAAGATCAACCCTGAACTGGTCCTACCCTGGAGAGGCAGgaGTGAGAGTACAGTACAGCTCCAGAGGTTCTTTGACAGTGACAACTACTGTCTGATCCTCCCCCCGGACCTCAAGTCAGCCATCGCTGCCGTCACATACATGGCTGAGCAGCTGAAGAAGCAGGATGGCTCCGACTCGGAGACAGGAGACTGGCAGTACATAGCCATCGTGGTGGACAGGCTGTTCCTGTGGCTGTTTGTCATCATCACTACTCTGGGGACTCTGGCCATGTTCATGGACGCCAGACTCAACTACACACCAGACGAGCCTTTCCCCCTGAGGCCGTAGTCCATTCACACACCCCAGCACAGCCACTCTGGTGCTCACAAGGGATTACAAGAACTACACTTCCCATAATTCCATAGCTGAGTACCAACTTCTTTGATATGACGAGGACCAGAGGTTTCCCCAGGTAAAACTCAGTGTTCTATGTATAATGTATTGTTAGGGATGACACAGTACCATATACTTTGATATGAATAGTCCCCTTCTCTAAACCTACTCCTTTATGAAAGCAATATAATCTAATATAGACGGTTTATAGATTAGCATCTATTTAAATAGGAcaaatatattatttatatacagtaccagtcaaaagtgtggacacacctactcattca

Function

NR:

description
PREDICTED: acetylcholine receptor subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987505.1 False 2186 mRNA 0.50 11 18911750 18928236
XM_036987506.1 True 2009 mRNA 0.50 11 18911750 18928236

Neighbor

gene id symbol gene type direction distance location
LOC118966177 NA coding upstream 65157 18845276 ~ 18846593 (+)
LOC110531665 LOC106577695 coding upstream 78268 18718365 ~ 18833482 (+)
LOC110531664 LOC106577696 coding upstream 238432 18656177 ~ 18673318 (+)
LOC110531663 LOC106577697 coding upstream 263075 18640655 ~ 18648675 (+)
LOC110531660 LOC106608810 coding upstream 590991 18301368 ~ 18320759 (+)
LOC110531666 LOC106577694 coding downstream 10359 18938595 ~ 18950268 (+)
LOC110531667 NA coding downstream 33101 18961337 ~ 18963380 (+)
LOC110531669 LOC106577692 coding downstream 48758 18976994 ~ 18982679 (+)
LOC110531668 LOC106577692 coding downstream 55047 18983283 ~ 18987728 (+)
ugt5g1 LOC106577690 coding downstream 66829 18995065 ~ 19007342 (+)
G777658 NA non-coding upstream 245 18908617 ~ 18911505 (+)
G777643 NA non-coding upstream 36455 18875093 ~ 18875295 (+)
G777603 NA non-coding upstream 97795 18813725 ~ 18813955 (+)
G777601 NA non-coding upstream 100513 18810896 ~ 18811237 (+)
G777749 NA non-coding downstream 122576 19050812 ~ 19051046 (+)
G777752 NA non-coding downstream 127798 19056034 ~ 19056422 (+)
G777754 NA non-coding downstream 134998 19063234 ~ 19063457 (+)
G777755 NA non-coding downstream 135866 19064102 ~ 19064330 (+)
G777396 NA other upstream 411732 18499614 ~ 18500018 (+)
G777165 NA other upstream 803268 18108019 ~ 18108482 (+)
G777113 NA other upstream 906082 18003267 ~ 18005668 (+)
G777111 NA other upstream 909568 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 889452 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 948032 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1081280 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1111375 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1151200 20079382 ~ 20082084 (+)

Expression


Co-expression Network