LOC110531666 (LOC106577694)


Basic Information

Item Value
gene id LOC110531666
gene name LOC106577694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18938595 ~ 18950268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614985.2
TGGGAGGAGGGGATGCGAGAAGAGACCTCTCACGCATCACCGGGCACGgtgactggacacacacaccccctcgcAGGCCCTCATGCAGAATTTAAATCCCCCTTCCCGCAAGCTCAGCACTACTATTCAAGGTGCGGCTCAAGCTATAACAGGTGGAAAGGAGATCAAGAACCACAACAAGATTGTGTTTACTGACGCTATCCTGACGCGTTTAATGAAGATAGGTAGATCCACCTTGCATATATAGACTGCATTAAGATAACCGTTGTGTGCCTTTGGACACGCACAAAAGGATTCATAGTTTTTTCATCAACAGAAACGTATTTATTTAGACATTTAGACAAAAATAATTGACAAAATAATTTTATTTTTAAAGATGGCAAATTCGGGAATTCAACTTTTAGGATTCGCCCTGTCACTCGTCGGTGTCATTGCACTTATCGTGGGGACCATTCTTCCACAGTGGAAGATGTCTGCACACGTAGGAGACAACATCATAACGGCGGTTGCCATGTACCAAGGACTATGGATGTCATGCGCTTTTCAGAGCACAGGGCAGCTCCAATGTAAAATCTACGACTCGATCCTGCAGCTAGACGGCACTCTCCAGGCCACTCGTGCCCTGATGATTGTTGGCATCATCGTATCCATCGCTGGGCTGGGCGTGGCCACCATGGGCATGAAGTGTACCACCTGCGGaggaaacaacaaaatgtggaagtctCGCACCGCCATGACTGGAGGTGTCATTCTACtggttggagCTCTGTGTGCATTAGTGGCCTGCTCGTGGTTCGCTCATAATCTCATCCGGGCCTTCTATAACCCGTATTCTCCTGTCAACACCAAGTTTGAGTTTGGGGCAGCCATCTTCATCGCCTGGGGGGGTTCTTTCCTGGACCTGCTGGGGGGAGCTATGCTGGCATCTTCCTGCCCCAGGAGTAAAAAGCCGGTGCCCAAATACCCTGTCATGAGTGGCGTGAGTGCTCTCTCACCATCCAGCAGCACCAAGGAGTACGTGTGAGCTAAATTATGCTGCCAGATTATAATGAGATTCACAGAAATTGTTGTGAGGTTTACAGATATGcccacaccccaccccaccccagcaGGACCGTTGTGATGTCTCTCACCCGCTCCCAAAATTCCACAATTGTTTATGAGTGGGCCTCACAAATACACTATAATTGGTTATTGGATCCCCCTTATATTATGTTTTAGGGTGCATGTTCTCgtattacacaaacacacacacacttctcttaTTACAGCCAAGATGCAGCATCATGGCAAACACTCACCTCCCTGTAAGAAACACTGTCTACTTAAATGAACATTTCCATTGTAATTGAAGGTAGTCAATTAAACTTGTTGTGGTGCTAAGGTCCTACTCTTGGCATACTCATGGGACAGCTATGTATGTAAAATAGGAAACGGGACTAGCGCACCACCAATACTTTTACAATGGAGTTTTTTGTAGACATGACCATCTCCAATTGTGTTCAATGTTCAATCCAAGTGGAACTTCACACTAGTTGTGAGTGACTGTATACGCTATGGTGAATCACCGGACAATTCACTGTTGCACtccaaaagggggggggggg

Function

NR:

description
claudin-7-A-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614985.2 True 1607 mRNA 0.47 4 18938595 18950268

Neighbor

gene id symbol gene type direction distance location
chrnb1l LOC106577752 coding upstream 10359 18911750 ~ 18928236 (+)
LOC118966177 NA coding upstream 92002 18845276 ~ 18846593 (+)
LOC110531665 LOC106577695 coding upstream 105113 18718365 ~ 18833482 (+)
LOC110531664 LOC106577696 coding upstream 265277 18656177 ~ 18673318 (+)
LOC110531663 LOC106577697 coding upstream 289920 18640655 ~ 18648675 (+)
LOC110531667 NA coding downstream 11069 18961337 ~ 18963380 (+)
LOC110531669 LOC106577692 coding downstream 26726 18976994 ~ 18982679 (+)
LOC110531668 LOC106577692 coding downstream 33015 18983283 ~ 18987728 (+)
ugt5g1 LOC106577690 coding downstream 44797 18995065 ~ 19007342 (+)
si:dkey-165a24.9 LOC106577691 coding downstream 57283 19007551 ~ 19009317 (+)
G777658 NA non-coding upstream 27090 18908617 ~ 18911505 (+)
G777643 NA non-coding upstream 63300 18875093 ~ 18875295 (+)
G777603 NA non-coding upstream 124640 18813725 ~ 18813955 (+)
G777601 NA non-coding upstream 127358 18810896 ~ 18811237 (+)
G777749 NA non-coding downstream 100544 19050812 ~ 19051046 (+)
G777752 NA non-coding downstream 105766 19056034 ~ 19056422 (+)
G777754 NA non-coding downstream 112966 19063234 ~ 19063457 (+)
G777755 NA non-coding downstream 113834 19064102 ~ 19064330 (+)
G777396 NA other upstream 438577 18499614 ~ 18500018 (+)
G777165 NA other upstream 830113 18108019 ~ 18108482 (+)
G777113 NA other upstream 932927 18003267 ~ 18005668 (+)
G777111 NA other upstream 936413 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 867420 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 926000 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1059248 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1089343 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1129168 20079382 ~ 20082084 (+)

Expression


Co-expression Network