LOC110531669 (LOC106577692)


Basic Information

Item Value
gene id LOC110531669
gene name LOC106577692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18976994 ~ 18982679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614988.2
GTCAATGGGTGAACCAGTAAGCCAttgccaagtgtgtgtgtgcgcgtgtgcgtgttgAGCCTTTCCTACATATGCCACACTTCTTGCTTGGTTTCAGTCACTCAGCATTCCTCTTCACCATCCTCTTCTCTGAAGCTAACTCAGAAGACGCCACCATGGCAAACACGATGGTCATCCAGCAGCCCAAGCCCTTTGTTCAGGCCATTACCTCAAACCAATGGAGCTCCGAAATCTGTGACTGCACCAAGGATATGTCTtcttGTTGCTTAGCATTCTGGTGCTTCCCCTGCTTTGCCTGTATAACGGCGAGGGAGGCTGGGGAGTGCCTGTGTCTGCCCCTGCTAGACGGCTTTGGCCTTATCCCCCCCGCCACCATGTCCCTGAGGGTGGGGATCCGCCAGCGCTACGGCATCGAGGGCACCATGTGTAATGACTGTGTCTATTCATTCTTCTGCGGGCCCTGCACCTGGTGTCAAATGTCAAGAGAGATGAAGACCCGCCTCCAACCAGTCACTCTCATCAACCCACATGCAAGATAAGGACAGACCTCgttcttcctcatcctcttcttcgTCATcctgcatcatcatcatcatatatccctcctcttcatcctcttcctcctctaccttcaTCATAGTAATTAGACTAATAAtaatcaacatcatcatcattagACTCGTGTTAATGGAATAGTAACAATACCAAGCCTGTACTTTCTACTACAGGAAGCTGCTgatgggaggacggctcataataatgtccggaatGGAGCAAATGGTGTATTTAATACCATCCCattaattccgctccagccattactacGGGCCCGTCCTCCACAATTAAAGGGCCACCAATATCCCGTGCTTTCTATCCTCTGTTGACTCTTCTATCACCGACCACTGTCACCAAACTCATCACCATTGAACGTCACACATGTGAACACCTGTACTTTGAGCCACCCAAAACTGTTCTCCATTCAGTTTCAAGCTTGTCTGCAATAGTGTCCTGTTCTTAGGTTGTTCACGTTCACTTCCACCCGGCTGACAGCTGAAATAGTTTACTGTGTATCTGTAAAGGCCCTTTAGATTTTCTGGGGTGTGTGAAAGATGAATGAATATGTGTGTATAAACACATTTCCAAAAGCCTTTTGAAAACTGGACCTTTTTATCTACCACTATGCGAAATGTACAAAACACGTCCAAATGTATTGTAGAAACATATGAGAGAAATAGGTGTGACACATTTCCAaacaacaaaacatacatttatactgcAAACATGAAAGATATATCTGAATGTATCTTAATTAATGGTGAATAAATGATTAAAAGATGa
>XM_021614989.2
TCCTACATATGCCACACTTCTTGCTTGGTTTCAGTCACTCAGCATTCCTCTTCACCATCCTCTTCTCTGAAGCTAACTCAGACGCCACCATGGCAAACACGATGGTCATCCAGCAGCCCAAGCCCTTTGTTCAGGCCATTACCTCAAACCAATGGAGCTCCGAAATCTGTGACTGCACCAAGGATATGTCTtcttGTTGCTTAGCATTCTGGTGCTTCCCCTGCTTTGCCTGTATAACGGCGAGGGAGGCTGGGGAGTGCCTGTGTCTGCCCCTGCTAGACGGCTTTGGCCTTATCCCCCCCGCCACCATGTCCCTGAGGGTGGGGATCCGCCAGCGCTACGGCATCGAGGGCACCATGTGTAATGACTGTGTCTATTCATTCTTCTGCGGGCCCTGCACCTGGTGTCAAATGTCAAGAGAGATGAAGACCCGCCTCCAACCAGTCACTCTCATCAACCCACATGCAAGATAAGGACAGACCTCgttcttcctcatcctcttcttcgTCATcctgcatcatcatcatcatatatccctcctcttcatcctcttcctcctctaccttcaTCATAGTAATTAGACTAATAAtaatcaacatcatcatcattagACTCGTGTTAATGGAATAGTAACAATACCAAGCCTGTACTTTCTACTACAGGAAGCTGCTgatgggaggacggctcataataatgtccggaatGGAGCAAATGGTGTATTTAATACCATCCCattaattccgctccagccattactacGGGCCCGTCCTCCACAATTAAAGGGCCACCAATATCCCGTGCTTTCTATCCTCTGTTGACTCTTCTATCACCGACCACTGTCACCAAACTCATCACCATTGAACGTCACACATGTGAACACCTGTACTTTGAGCCACCCAAAACTGTTCTCCATTCAGTTTCAAGCTTGTCTGCAATAGTGTCCTGTTCTTAGGTTGTTCACGTTCACTTCCACCCGGCTGACAGCTGAAATAGTTTACTGTGTATCTGTAAAGGCCCTTTAGATTTTCTGGGGTGTGTGAAAGATGAATGAATATGTGTGTATAAACACATTTCCAAAAGCCTTTTGAAAACTGGACCTTTTTATCTACCACTATGCGAAATGTACAAAACACGTCCAAATGTATTGTAGAAACATATGAGAGAAATAGGTGTGACACATTTCCAaacaacaaaacatacatttatactgcAAACATGAAAGATATATCTGAATGTATCTTAATTAATGGTGAATAAATGATTAAAAGATGa

Function

NR:

description
cornifelin homolog B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614988.2 False 1338 mRNA 0.45 4 18976994 18982679
XM_021614989.2 True 1272 mRNA 0.45 4 18977057 18982679

Neighbor

gene id symbol gene type direction distance location
LOC110531667 NA coding upstream 13616 18961337 ~ 18963380 (+)
LOC110531666 LOC106577694 coding upstream 26726 18938595 ~ 18950268 (+)
chrnb1l LOC106577752 coding upstream 48758 18911750 ~ 18928236 (+)
LOC118966177 NA coding upstream 130401 18845276 ~ 18846593 (+)
LOC110531665 LOC106577695 coding upstream 143512 18718365 ~ 18833482 (+)
LOC110531668 LOC106577692 coding downstream 604 18983283 ~ 18987728 (+)
ugt5g1 LOC106577690 coding downstream 12386 18995065 ~ 19007342 (+)
si:dkey-165a24.9 LOC106577691 coding downstream 24872 19007551 ~ 19009317 (+)
LOC110533003 LOC106577683 coding downstream 78489 19061168 ~ 19062311 (+)
LOC110532947 LOC106577684 coding downstream 88164 19070843 ~ 19074558 (+)
G777658 NA non-coding upstream 65489 18908617 ~ 18911505 (+)
G777643 NA non-coding upstream 101699 18875093 ~ 18875295 (+)
G777603 NA non-coding upstream 163039 18813725 ~ 18813955 (+)
G777749 NA non-coding downstream 68133 19050812 ~ 19051046 (+)
G777752 NA non-coding downstream 73355 19056034 ~ 19056422 (+)
G777754 NA non-coding downstream 80555 19063234 ~ 19063457 (+)
G777755 NA non-coding downstream 81423 19064102 ~ 19064330 (+)
G777757 NA non-coding downstream 82447 19065126 ~ 19065349 (+)
LOC110531664 LOC106577696 other upstream 319420 18656177 ~ 18673318 (+)
G777396 NA other upstream 476976 18499614 ~ 18500018 (+)
G777165 NA other upstream 868512 18108019 ~ 18108482 (+)
G777113 NA other upstream 971326 18003267 ~ 18005668 (+)
G777111 NA other upstream 974812 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 835009 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 893589 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1026837 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1056932 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1096757 20079382 ~ 20082084 (+)

Expression


Co-expression Network