LOC110531668 (LOC106577692)


Basic Information

Item Value
gene id LOC110531668
gene name LOC106577692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18983283 ~ 18987728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614987.2
CAAGTTGGCATTGGGGGGGCAGGAAAAAGTAACAATCCATTGATGTTTGTTGTTGCTTTTTGTTCAGGTTCTTTGTCCTTAGTCGAGTGGCCAGCCGGCCAGTCACCATGGCAACGAGTGTGATAATCAACAACCAACAATCTCAGCCTCCTCAGCCCCAGACACCAGCTTTCATAGCTGTCCACTCTAACCAGTGGAACACTGGCATTTGTGACTGCTTCGACGACTTGCAAGTCTGCTGTTTTGCCTTCTGGTGCTTCCCCTATTTCGCCTGCACCACCACCTCAGAGTTCGGAGAGTGTTTCTGTCTCCCCATGCTGGACGGCTTATGTTCCTCCACCCAGCTGGTAGGGGTGCCAACCTGCATTCCTCCTGTGTCCATGTCCATGAGGGTGGCTGTACGTACCCGCTATGGTATTCAGGGTGGCATGACGGCAGACTGTGTGTACTCCACCTTCTGCAACATCTGCTCCTGGTGCCAGATGGCCAGGGAGATCAAGAGACGCAAACAGACCTTCACCGTCATCAACGCCCAGCCCACCATGCTGCCCGGTCAGCCCATGTTGATGGCCTCCCAGCCTGGGGTCATCACATCTCAGCCTATGATCACCTCTGCCCCTCAGGCCATCTTGAGCACTAGATTCATGTAACCTTTGACCCAAGACACAGAAACCACACTGGGTTAGCCACGCCCTCTGGTGGTGATTTCATAGAGgtgatgtaatggaggtgatgcACAATGTATAAGACTTGAGGCATTGGAATTCATGTAAAATCTTGCACAATTGCAGCATTTACTGTACATAAGGATAGCTGTGAAATGTAAGTATCTACTATTTTAACTATGTCAATCACCCAATGCAGATTGTTATGTAATAATGAACATTTGGTGGGTGcctatatttgtcctatttcatatGTGCAAGTGTGTATTGtatgcatgtgtgaattggaaatgtattttttccatatcccaactccccctgagacaccctctgagagtggggtcacggccagggtctgccattatcaacggcGACCCTGGAGCATTTAGgatgaagtgccttgctcaaggacacatcgaTTCACACAATGTGACGTAAGTAAGCCTTCTGTTACCTTGAGAGCCAGACAGTTATTAATGTCTGTGGATAAGGCCagtatcagagggagagagagaaggagtgagagagggagagggagagtaagagagagagagagaggggaaggctgtaGCCCTCTCTGATAGGACTGTGCTAACAGTCACAGTGACTCATGTTCAtcattaaatgtttatttttatactGCTGTGACCTCCCTCCCTCTGACTTTCCAAAACAGTAAAGGACGTTACTGTACTTCAGGGAAGAGTGGAGTCCATCTCTAATGTCATGGATGTAATGTTGAATATGTTACAGTATGGTCCTACTGCATTTAAAAATTAAAACATCATCTATACAAAGATAATGTTAATGTGTAATGTTGCTATGCCTGAAACGTGTATATTCTCAGTTAAACTCAATAAACATTTATC

Function

NR:

description
cornifelin homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614987.2 True 1534 mRNA 0.47 3 18983283 18987728

Neighbor

gene id symbol gene type direction distance location
LOC110531669 LOC106577692 coding upstream 604 18976994 ~ 18982679 (+)
LOC110531667 NA coding upstream 19905 18961337 ~ 18963380 (+)
LOC110531666 LOC106577694 coding upstream 33015 18938595 ~ 18950268 (+)
chrnb1l LOC106577752 coding upstream 55047 18911750 ~ 18928236 (+)
LOC118966177 NA coding upstream 136690 18845276 ~ 18846593 (+)
ugt5g1 LOC106577690 coding downstream 7337 18995065 ~ 19007342 (+)
si:dkey-165a24.9 LOC106577691 coding downstream 19823 19007551 ~ 19009317 (+)
LOC110533003 LOC106577683 coding downstream 73440 19061168 ~ 19062311 (+)
LOC110532947 LOC106577684 coding downstream 83115 19070843 ~ 19074558 (+)
rbm4b LOC106577685 coding downstream 99935 19087663 ~ 19105988 (+)
G777658 NA non-coding upstream 71778 18908617 ~ 18911505 (+)
G777643 NA non-coding upstream 107988 18875093 ~ 18875295 (+)
G777603 NA non-coding upstream 169328 18813725 ~ 18813955 (+)
G777749 NA non-coding downstream 63084 19050812 ~ 19051046 (+)
G777752 NA non-coding downstream 68306 19056034 ~ 19056422 (+)
G777754 NA non-coding downstream 75506 19063234 ~ 19063457 (+)
G777755 NA non-coding downstream 76374 19064102 ~ 19064330 (+)
G777757 NA non-coding downstream 77398 19065126 ~ 19065349 (+)
LOC110531664 LOC106577696 other upstream 325709 18656177 ~ 18673318 (+)
G777396 NA other upstream 483265 18499614 ~ 18500018 (+)
G777165 NA other upstream 874801 18108019 ~ 18108482 (+)
G777113 NA other upstream 977615 18003267 ~ 18005668 (+)
G777111 NA other upstream 981101 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 829960 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 888540 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 1021788 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 1051883 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 1091708 20079382 ~ 20082084 (+)

Expression


Co-expression Network