XLOC_026624 (arf2a)


Basic Information

Item Value
gene id XLOC_026624
gene name arf2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37558491 ~ 37588855 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051865
ATTTTGTTTTTAGCGGTGAGGAGGAGAACCGGAAAATTGTAGCGAAAACTGCACCAAAAGATCTGCCATCATGGGGAATATGTTTGCAGGCCTATTTAAGAATCTCTTTGGGAAGAAAGAGATGAGAATTCTGATGGTGGGCTTGGATGCTGCCGGAAAGACCACCATCCTGTACAAACTGAAACTGGGAGAAATCGTCACCACCATCCCCACTATTGGTTTTAATGTTGAGACAGTAGAGTATAAGAACATCAGCTTTACAGTGTGGGATGTGGGCGGTCAGGATAAGATCCGACCGCTTTGGAGGCACTATTTCCAGAACACGCAAGGCCTGATTTTTGTTGTGGACAGTAATGATAGGGAGAGAGTGAATGAGGCGAGGGAGGAGTTGACAAGGATGCTGGCAGAGGATGAGTTGAGAGATGCTGTGTTGCTCGTCTTTGCTAACAAACAGGACCTGCCCAATGCCATGAACGCAGCTGAGATCACAGATAAGCTGGGCCTTCATTCCCTGCGTCATCGTAACTGGTACATCCAGGCCACCTGCGCCACTAGCGGTGATGGCCTTTATGAAGGGCTTGACTGGCTCTCTAACCAGCTCAAAAACGCTAAATGATCCATTCCACCTTTTCTTCTTCTGTcagcgctgtgtgtgtgtatgagtgtatgtaaaAGGCGATAGCACTGGTTTCAGTCTCTTCTGGTTGCCCAGTTTATTCATTTCCTTCTCTTGTCCAGTCTTGTATACGTCAGAGACTCTGCCCAGTGCTGTCTAAATacacgtgtgtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgcatgtgtgtgtgtgtgaactgagGGTGGGAGTAGCCTTGCTGTGCCTTTTCAAAATAGACACTCAGCGTACAGCAtggttctctctttctctctcttctctctcctctCCCCGTGGTTTTCTGCACGCAAAGAATGACCCAGGATGTTAAATATTTCTGTTACCTAATACACTGAAACCAGATTATAGGCCTGATTTTTCTTCCCTTTCCCAATGTTTAAAGCAATCACGCATGACTTAAAAAATGTTACAAGGTGTGAGTTGCCATCCTTTGACCCCCACATTTGATAAAACTCATTGTAACCTGCATCAGGTTGGGAAAATAAAAGAAGGAACAAAAATCAGACAATAAAGTGACATTCTGTTTTCCATCCATTCTTCTTCGCGTTCTTTGAAAATCATGCTAACGCTttcaggtaggtcacatgatgcTTTCCATGTGAACGTCAGCTCGATTTCTCTACTGCCTGTGAAACATTTCGTTGGACTGAAAGACGTCTTAAACTATCACTGGTGGGGAAGAAATCATTTGACCCTGTGTGTCTGCTGTAGTATCAGATCATCCAATCAAATCCCAGGCACTAATAACAGCCTTACATGTGTTTGGATTGGCATGTAAGCGGCGGCTGCAGAAGTGTTTGTGGGAGTATGGAGGGAGTGAGCGCCTTCTGCTGGAGCAGCGAGGCCTTTCGCGAGCTGCTCCCACTCCAGTGATCCTTCTTTTAGctctctttctttatttttattgatgatgtgataattattttttttttgttttgttattgcgGTCTCTTTCGAGGTGTCCTCCATCATATGTACAGTCAGAATCTCATGAGCGTTCAGGTGAGGCCACTAAGGGCTTTTTAGGATGCattattttttcccttttgtAATCTCTAAAACCGAGATGCATGATCGATCGATGGCACACTTGCCTGTAAGCTTAAGTGGTTGTTTCTGATTTTCTTTGAGTGAGAGAATTTTAGAACAGCTTTAGGTTAAAATGCAAACTTATCCAGCCAGCCTCCCTTTTCCATATTTCACAATTTCCTCATTTCCATCCGTCGATGGCTGCTCTACCTGATGCACcagtttattttgaaaagtgtcaCTGATAGAAACAAGCACCAGCAAAGAGATGTTTGCTTTGGGAACGTGTACACGCTTCTTTTAATAATCCAAAACTGACAAACCTGTTTGTTTCTTTTCCTCTTCTTCATATTCCAAAGGCAACTGCAGTGTTGAATGCAGCATCTGTAAAGATCCCAGTGGTTTAATCCTTTACTGACCTCTCACAAGGGAATAGGTGACGTTTTACCTTGTGTGAAACTTGATAGTGACATGAATGCATTTGGTTAGTTTAGTTTTCCTCCCCCTTTGTCTGTCATCGAAATTCATGTCTCATAACtctaataatgtttataatttgtttttttcttggcCTTTTAGTTCTTATGATACAGATCTACTGTAGTAGAAAGATTTATTTGAATAAGCATCATCTATGACAAGTAATTAAAGTGTATGAACTTaagtatgaaaatgtatttagctTGCAGATTTCATTTAGCTATCCTATGTTCAGATGTGAAGCTTTAATTTCAACAATTCTGTAAAATAATAGGAGCAAGGAAcgtgtgcatatgttttgttttcttttactgaaatggtttttgttttagcttctttttttttaaaacccatctTGTAACATCTGATAAATGCACTATAATAAAGAGATCTCTATTACAACTTA
>TCONS_00051866
TTTCTCCAGATATATCAACAGACGGCCAAACCTTGCAAGCCCAGTGTGAAAACATCCAACCTTTTGCAGATCTGCCATCATGGGGAATATGTTTGCAGGCCTATTTAAGAATCTCTTTGGGAAGAAAGAGATGAGAATTCTGATGGTGGGCTTGGATGCTGCCGGAAAGACCACCATCCTGTACAAACTGAAACTGGGAGAAATCGTCACCACCATCCCCACTATTGGTTTTAATGTTGAGACAGTAGAGTATAAGAACATCAGCTTTACAGTGTGGGATGTGGGCGGTCAGGATAAGATCCGACCGCTTTGGAGGCACTATTTCCAGAACACGCAAGGCCTGATTTTTGTTGTGGACAGTAATGATAGGGAGAGAGTGAATGAGGCGAGGGAGGAGTTGACAAGGATGCTGGCAGAGGATGAGTTGAGAGATGCTGTGTTGCTCGTCTTTGCTAACAAACAGGACCTGCCCAATGCCATGAACGCAGCTGAGATCACAGATAAGCTGGGCCTTCATTCCCTGCGTCATCGTAACTGGTACATCCAGGCCACCTGCGCCACTAGCGGTGATGGCCTTTATGAAGGGCTTGACTGGCTCTCTAACCAGCTCAAAAACGCTAAATGATCCATTCCACCTTTTCTTCTTCTGTcagcgctgtgtgtgtgtatgagtgtatgtaaaAGGCGATAGCACTGGTTTCAGTCTCTTCTGGTTGCCCAGTTTATTCATTTCCTTCTCTTGTCCAGTCTTGTATACGTC
>TCONS_00051867
TGCATCTGCCTAAAAGTAGTCAACGAGGCTTAAGTTAACTGTTTTTAGACTTGGGTTTTATACCAAATCAGCTTTTATTGACAAAACCTACACATGACGTTGCTGTTGTCTTGTAAACACGAGATCTCTGGGCCGTTTCACCTCCAAGCTTTTTTCCCCCTGCAGGCCTTTAATAAAGATATATCAACAGACGGCCAAACCTTGCAAGCCCAGTGTGAAAACATCCAACCTTTTGCAGATCTGCCATCATGGGGAATATGTTTGCAGGCCTATTTAAGAATCTCTTTGGGAAGAAAGAGATGAGAATTCTGATGGTGGGCTTGGATGCTGCCGGAAAGACCACCATCCTGTACAAACTGAAACTGGGAGAAATCGTCACCACCATCCCCACTATTGGTTTTAATGTTGAGACAGTAGAGTATAAGAACATCAGCTTTACAGTGTGGGATGTGGGCGGTCAGGATAAGATCCGACCGCTTTGGAGGCACTATTTCCAGAACACGCAAGGCCTGATTTTTGTTGTGGACAGTAATGATAGGGAGAGAGTGAATGAGGCGAGGGAGGAGTTGACAAGGATGCTGGCAGAGGATGAGTTGAGAGATG

Function

symbol description
arf2a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040122-4 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000014763

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051865 False 2600 mRNA 0.42 5 37558491 37571601
TCONS_00051866 False 760 mRNA 0.47 5 37560340 37585863
TCONS_00051867 True 603 mRNA 0.45 5 37563945 37588855

Neighbor

gene id symbol gene type direction distance location
XLOC_026623 SRCIN1 coding downstream 82016 37235924 ~ 37476475 (-)
XLOC_026622 mlx coding downstream 409897 37135516 ~ 37148594 (-)
XLOC_026620 tubg1 coding downstream 475873 37059803 ~ 37082618 (-)
XLOC_026621 CT573704.2 coding downstream 482678 37075698 ~ 37075813 (-)
XLOC_026619 NA coding downstream 586269 36969403 ~ 36972222 (-)
XLOC_026626 NA coding upstream 45245 37634100 ~ 37649389 (-)
XLOC_026627 gpatch8 coding upstream 73589 37662444 ~ 37699992 (-)
XLOC_026628 si:dkey-260c8.6 coding upstream 168530 37757385 ~ 37759996 (-)
XLOC_026629 baxa coding upstream 177618 37766473 ~ 37773800 (-)
XLOC_026630 baxa coding upstream 187634 37776489 ~ 37785873 (-)
XLOC_026618 CT573704.1 non-coding downstream 590498 36967871 ~ 36967993 (-)
XLOC_026617 NA non-coding downstream 604403 36953625 ~ 36954088 (-)
XLOC_026612 FO744883.1 non-coding downstream 802342 36756033 ~ 36756149 (-)
XLOC_026631 BX936420.1 non-coding upstream 937124 38525979 ~ 38529416 (-)
XLOC_026636 NA non-coding upstream 1382580 38971435 ~ 38975698 (-)
XLOC_026637 NA non-coding upstream 1523459 39112314 ~ 39113547 (-)
XLOC_026646 CU464118.1 non-coding upstream 1783018 39371873 ~ 39454903 (-)

Expression


Co-expression Network