LOC118966012


Basic Information

Item Value
gene id LOC118966012
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19066691 ~ 19070212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053199.1
cacaGGATCAAGGCAAGCAGCAGTCACTGCCACTGGGGGTGCTGTTTCGGGTGCTGCTGACGTAACGATCGTCCTCTTGTCGTTGTTTGCTGTCCAGTTCCCTCCAACACTCGTTATAGTAGGTACACAACTTGGCGTGTCAGTAGACAATTCGCTGTACCCGTTCAAGTAGACAAAGCAAGTCAATCGTTGGACACAGTTTTACTGGAGCCTGACCTTTTGAGACGCTGCGGGCAAAACAACTATTCTTACCACCGAGATAAAGACAATTTCAAGTTGGATATTCACGCTTTCAAACCTCAATCCACTTGAGCCACAGACACCAAAATGTCCATGGACTGTCAGATGAGCGGTAACGTGAATGATCCCGGAGCAGCTGGCGGGAGCCctggggagagttctcttttctttgtgaagggcagggcacCCTGGAATGGGTTTACCTTGAGAGAGGGGCCCTGGAAATCATTGCGGTTTCAGCGTCGTCCGACCAAGTTAACCAGAAAGTGAAAGAAAACATCCCTTCAATTGCATCAGCCATCATAAGATCCATCATGGAGGTGTCTCACACCATGGAAACAGAGGAGCTGATGACATGCCTCCAGATCCAGCTCTACACTGCATATTGCCCCTGGACACAAGTACCAGGCTGAGGACCCAGTGAGGCAATTGTGCATTGAGTTTCTTTCATAGATTACTTTTACTACAATAACAGCCATATTGTATTATTTTCTCTTTAATTAGAAGCAGTTTTCTTAAAATGCTTAACATTCTGAAAGCTTAAATCAAAATATTGACTGTGGCAACAAGCTATCAGTACCTCAAATGTTTTTATATTCTACCTTATAACCTACTCCTCAAGTATTATCCAGACTTACGTTATTTTATAAAATGTGACACTAAAGAATGTGAATATTACCCTTTTTCATGATACCCAAATAAGAGCAAGAATCAGAATTCAATGAAGGACGATGTTAAGGTGGGGGAAGGATATTGTTATGTCACCGTTTTGTAAATGTTGATTATAATAATTAAACCGTTTGATTTGA
>TU887242
CTCCAACACTCGTTATAGTAGGTACACAACTTGGCGTGTCAGTAGACAATTCGCTGTACCCGTTCAAGTAGACAAAGCAAGTCAATCGTTGGACACAGTTTTACTGGAGCCTGACCTTTTGAGACGCTGCGGGCAAAACAACTATTCTTACCACCGAGATAAAGACAATTTCAAGTTGGATATTCACGCTTTCAAACCTCAATCCACTTGAGCCACAGACACCAAAATGTCCATGGACTGTCAGATGAGCGGTAACGTGAATGATCCCGGAGCAGCTGGCGGGAGCCctggggagagttctcttttctttgtgaagggcagggcacCCTGGAATGGGTTTACCTTGAGAGAGGGGCCCTGGAAATCATTGCGGTTTCAGCGTCGTCCGACCAAGTTAACCAGAAAGTGAAAGAAAACATCCCTTCAATTGCATCAGCCATCATAAGATCCATCATGGAGGTGTCTCACACCATGGAAACAGAGGAGCTGATGACATGCCTCCAGATCCAGCTCTACACTGCATATTGCCCCTGGACACAAGTACCAGGCTGAGGACCCAGTGAGGCAATTGTGCATTGAGTTTCTTTCATAGATTACTTTTACTACAATAACAGCCATATTGTATTATTTTCTCTTTAATTAGAAGCAGTTTTCTTAAAATGCTTAACATTCTGAAAGCTTAAATCAAAATATTGACTGTGGCAACAAGCTATCAGTACCTCAAATGTTTTTATATTCTACCTTATAACCTACTCCTCAAGTATTATCCAGACTTACGTTATTTTATAAAATGTGACACTAAAGAATGTGAATATTACCCTTTTTCATGATACCCAAATAAGAGCAAGAATCAGAATTCAATGAAGGACGATGTTAAGGTGGGGGAAGGATATTGTTATGTCACCGTTTTGTAAATGTTGATTATAATAATTAAACCGTTTGATTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053199.1 False 1049 mRNA 0.43 3 19066691 19070212
TU887242 True 948 lncRNA 0.41 3 19066691 19070111

Neighbor

gene id symbol gene type direction distance location
LOC110531672 LOC106577688 coding downstream 19218 19017546 ~ 19047473 (-)
LOC110531673 LOC106577689 coding downstream 49287 19010092 ~ 19017404 (-)
LOC110532946 NA coding downstream 77047 18987822 ~ 18989644 (-)
LOC110531661 LOC105020576 coding downstream 460469 18331006 ~ 18606222 (-)
LOC110531659 LOC106577767 coding downstream 767874 18283728 ~ 18298817 (-)
tifa LOC106577687 coding upstream 13820 19084032 ~ 19085999 (-)
nitr2 nitr2 coding upstream 49288 19119500 ~ 19124018 (-)
LOC110532949 nitr3 coding upstream 77890 19148102 ~ 19156589 (-)
nitr3 nitr3 coding upstream 102423 19172635 ~ 19174378 (-)
LOC110512425 LOC106577746 coding upstream 107833 19178045 ~ 19179798 (-)
G778666 NA non-coding downstream 8271 19058120 ~ 19058420 (-)
G778626 NA non-coding downstream 85631 18970964 ~ 18981060 (-)
G778584 NA non-coding downstream 150082 18916300 ~ 18916609 (-)
G778575 NA non-coding downstream 171133 18895261 ~ 18895558 (-)
G778574 NA non-coding downstream 172056 18894336 ~ 18894635 (-)
G778678 NA non-coding upstream 5906 19076118 ~ 19076772 (-)
G778679 NA non-coding upstream 6853 19077065 ~ 19077316 (-)
G778682 NA non-coding upstream 8893 19079105 ~ 19079319 (-)
G778694 NA non-coding upstream 38666 19108878 ~ 19109250 (-)
G778696 NA non-coding upstream 41488 19111700 ~ 19111989 (-)
G778216 NA other downstream 708588 18355441 ~ 18358103 (-)
G776822 NA other downstream 1406208 17659690 ~ 17660483 (-)
G776820 NA other downstream 1407288 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1410366 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1410711 17655594 ~ 17655980 (-)
G780209 NA other upstream 747479 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 1001784 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 1231866 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1860748 20930960 ~ 21272646 (-)
G782003 NA other upstream 2705506 21775718 ~ 21776210 (-)

Expression


Co-expression Network