nitr2 (nitr2)



Basic Information


Item Value
gene id nitr2
gene name nitr2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19119500 ~ 19124018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>NM_001124299.1
ACTCTCATCTGACACACAGGATGACTAGTCTACACATGAGAAGCTATCATcagagaaggaattatacaataaCCCAACTGTTTCTCATATTTTTACTGATGTTTAAAACAGGGTCTCTTGCTAAAATCAGCCAGAGCGATGTCTTAAAGACTTTCCTGGCTGGAGACAGAGTTCATTTGGAATGCCTCACGTCAGAAGAAGATGGCAACTACTACAACTGGATCAAGATAATAATAGGACAAGCCCCAGTATTGATGCTGTCTCTttacacacactccaacactgcaAAGTTCTTTGGAGAGTTTAACAACAACCCCCGGTATATGGCAACGAAGAATGGAACCAGTTTTGTGCTGACTATTTCAGATGCTAGACCATCAGATATGGGGATGTATTACTGTGCTGCACGCGATTACGATGCCATGATCTTCGGGAAGGGTGTGTTTCTGATGTATGGGGATGTAGATTCCAGGAACCAGCATCTTACTCAGCAGTCTGTGTCTGAGTCTGTCCAGCCAGGAGACTCTGTGACTTTGAACTGTACAATACACACTAAGACCTGTTCAGGAGATCACAGTGTCTATTGGTTCAGACATCGTTCAGGAGAATCCCATCCAGGAATCATTTACACACATGGAGACAGGAGTGATCAGTGTGAGAAGAGCCCTGAGGCTGGGTCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAGGAACCTCATCCTCTCTGATGCTGGGACTTATtactgtgctgtggcctcatGTGGGGAAATACTGTTTGGGAACAGGACCAAGCTGGATGTTGGAGGCCCTGCTGATCTGGTGGACCCCAAGCTCCTGGCTCTAATCGTATCCAACATCTTGAGCTTGATCGCAGTCGTTGTCCTCATCTGTGTGAGAAGGAAGAAAGGTTTGCCTCAACATCCTCAAAGTGGTGTTACAGCCCCTTCCTGTCCTGACAAGGAGagagatgagggagaggagctgAACTATGCTGCCATGAGTTTCTCCTCGAGGAAGACCAAGAGGAGAACAgaaccagagagacagaccagagcgaCGGACACGAATGTGGTTTACTCTGGAGTCAATCATGAGTGGAACTGGGATTCATGATTTATAATGCAATAGTTTTATAATGCAACTTAGAGT

Function


NR:

description
novel immune-type receptor 2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
NM_001124299.1 True 1154 mRNA 0.46 6 19119500 19124018

Neighbor


gene id symbol gene type direction distance location
tifa LOC106577687 coding downstream 33501 19084032 ~ 19085999 (-)
LOC118966012 NA coding downstream 49288 19066691 ~ 19070212 (-)
LOC110531672 LOC106577688 coding downstream 72027 19017546 ~ 19047473 (-)
LOC110531673 LOC106577689 coding downstream 102096 19010092 ~ 19017404 (-)
LOC110532946 NA coding downstream 129856 18987822 ~ 18989644 (-)
LOC110532949 nitr3 coding upstream 24084 19148102 ~ 19156589 (-)
nitr3 nitr3 coding upstream 48617 19172635 ~ 19174378 (-)
LOC110512425 LOC106577746 coding upstream 54027 19178045 ~ 19179798 (-)
LOC110531690 NA coding upstream 72250 19196202 ~ 19197333 (-)
LOC110531677 LOC106577725 coding upstream 77935 19201953 ~ 19204332 (-)
G778697 NA non-coding downstream 6573 19112661 ~ 19112927 (-)
G778696 NA non-coding downstream 7511 19111700 ~ 19111989 (-)
G778694 NA non-coding downstream 10250 19108878 ~ 19109250 (-)
G778682 NA non-coding downstream 40181 19079105 ~ 19079319 (-)
G778679 NA non-coding downstream 42184 19077065 ~ 19077316 (-)
LOC110531685 LOC106577724 non-coding upstream 123787 19247704 ~ 19249648 (-)
G778787 NA non-coding upstream 153301 19277319 ~ 19278218 (-)
G778849 LOC106608711 non-coding upstream 274203 19398221 ~ 19442473 (-)
G778216 NA other downstream 761397 18355441 ~ 18358103 (-)
G776822 NA other downstream 1459017 17659690 ~ 17660483 (-)
G776820 NA other downstream 1460097 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1463175 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1463520 17655594 ~ 17655980 (-)
G780209 NA other upstream 693673 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 947978 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 1178060 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1806942 20930960 ~ 21272646 (-)
G782003 NA other upstream 2651700 21775718 ~ 21776210 (-)

Expression



Co-expression Network