XLOC_026625


Basic Information

Item Value
gene id XLOC_026625
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37581522 ~ 37584807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053074
CTGAACTATAGATCATGCCAGTTTCACAGTGTCCATTATTTAGGCTTTGTGTGTTTGCACATGTGGCATGGTACGTAATCATGCGCAAGGTCAACTATTTGTATATGTTTTGGGTGAGTGAAATGAGAATGAGGCTCAGGTTTAGAGCAGTGACAGGAAAATACTGCAGGTCAGCATCCGTCAGCTCCATGATTAGCTTTGATTTAACTAGAGAGCAGGTGCTCGCGTGCAGAGCCGGGACAGGTGTGCCACCACAAacacagaaagagaaagagagagaaatcagCACTTTTATAGTCAATCCTTTTcacaaacatatatttttaaaaaggtagtattttatttgaatatgaTAAATTGGTTCTTAAATAGGAAAATAGGTCACAAAAGTACAATAAAAAGCGTAAATGCATCTGTATTTCTGGGTAAAGCTTTTAAAAGAAAAAGCATTGTCTTAAATATCTAGTAAGAGAATTAAAAACACATCTTAACATCCATAATTGACCGGGTGAGGTAGTAGAAAAAATCCCAGGCATGAAATCGCAAAGTGAAACATTACACTGTTAAAGCTatgacaacacaaacaaacacataacccTGCAGGTTGAAAGAGGGTTCATTGTGGGTGTCTATGCTATAAATGTTACTATTTCAACAACTGCAGCAAAGAAACACAGGCAAAATACAATCATATTCACTTGTATATCGCACACTCAGATGTAGGGAAGGAtctcatttgtttttttcatagCCCCCGTTTGGGTTTTGGATATTTGCATGTGCTAACTCAGTGACCGAACTCTTTTTATTTAGCTAAAATCTCTTTTGTAGAAACTGAATTGATTACAGATGAAAGAGTTTCAGTTAGACGGAATGAAACCCTCTTGCACCAAACGTTTTACACATTATAAATGCTTCAGCTGAATGGCATGTCACTGAATGCTTGGACTTTCTTCCACTTGATTGATGTGGCCAATTTTACTGCAGTTTTCTTCCTTCCCAGAAACaccacacacagagagagaagcaCACACATGAACAAGTAGGCACGTACACACTCACATTCTAAAactttacatttgtattttagttGATAAGTAtagaaatgcatgtttttttacagaaaaaaatgatgTAATACTTGTTGTTTCAAGTTAAAATGTGCCCTTAATGAACTTATACTAAGCTGATTATTTATACTAAGctgtattattttcatttacgtttggtctttttttaattatataattaattgaaaaacaaagcaaatcaaaTGTAGGAActgcaaaataaaacaagaactcagttgaaaacaacaaacaaataactgGACTGCAAAACAATAACTAAAtttaaatcaacaaacaaaaaaaaaactatggattacaaaacaaacaaaacaagatctAAGTTGAACACAACAATCAAAAAACCTATGGactacaaaacaaaaactaagttgaaaacaacaaacaaactggACTACAAAACAAGAACTAAGTTAAaaacaacaagcaaacaaaacaagaacttagttgaaaacaacaaacaaacaaactggactaacaaacaaacaaaacaagaactaagttgaaaacaacaaacaaaaaaactggactataaaacaaacaaaataagaactaagttaaaacaacaaacaaaaaaactggactataaaacaaactaaacaagaactaagttaaaacaacaaacaaaagaactATGGCCTACAAAACGAACAAAACAAGAATTAagtttaaaacaacaaacaaacaaaaaataaagactgttaaacaaacaaaataagaacTAAGttgaaaacaacaaacaaacaaactggacTCCCAAACAAGCAAGACAAGAACTAGttgaaaacaacaaacaaaaacaacagactACAAAACAATAAGttgaaaacaacaaacaaaaaactatggactacaaaacaaacaaaacaagaactaagtaaaaaaatcatcaaataaataagctatgtactacaaacaaacaaacaaacaactactcaaaactacaaaacaaacaaaacaaagattaaacagaaaactacaaaaaaaatcaacgaaataaataacaaagacgcaaaaaaaaactgaccaattaaacaaaataaaatgtatttgagaaacaatcataataaaaataataataatatattttgttgtttttacaaaaGATTAAGACAGTGTCTGAAACAAAGGCATTCATTTAGGCATTCAGCAAACTTTCAGCTCTGGCACATCCTGGCAAAAAAGCACTGTTATTTTCTCTGATTGGTAATGGGCTAATAAGGGACTGGAACAGACTTTATCAAAGGCTTCACACACATGAAAGACTTTATAGGGCAGAGAGCCTTTGTGACTAGGAAAGGAGATGTTTTCCTTTGTTCTGGATGCGACATATTCCCTCTCGTTTGCCTTGATAGAAAAGTAAAGAATAGAGTCTACACACTCAGACGCCCAGATGTTTGCACATACTATACACAGCTGTAGAAAGAGGTTATGTTAGGGTCATGCTGTAATGATTCCTAATGcttgtgcttttgaaaactccTGCATATAAAGTGGTATATCATGCAGGATCGTGGCAAATGAaactaaaaaaaagtataatatatgAATGCAGTTTGGAATGCACCAGCTAGTGTACTTGAAATTGATCCAGCATTTGATCAGTTTTGTCTAATTGCAATAAATACGTTCCTATCTATTATCACATACAGCCATTTAATGGCCATTAAAGATATAAACATAACATTTAGATTATATAACTTGCTCTAACATTCATTAGAAGTCTATAAAAGCACACTGTGTCCCAGTAGATTTCCAGTTTATCAGCATACCTCCCCTCCTCTAAACCACATTTTTAATATACCTATGTTAAGCATGATACCTTTGAATACAATAAAAGATGCAAGTACTTTCTTCCTCACAAATATAAGACTATtcacaaataaatgcattaagtGCTTCATACTTTCAGTATATTTTGAAGCCATATGTGGACTCTCAGAGCAATAGAGAGATATACAGTATAGGCAGGTAGAGAAATGCAAGCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053074 True 3078 lncRNA 0.33 2 37581522 37584807

Neighbor

gene id symbol gene type direction distance location
XLOC_026623 SRCIN1 coding downstream 105047 37235924 ~ 37476475 (-)
XLOC_026622 mlx coding downstream 432928 37135516 ~ 37148594 (-)
XLOC_026620 tubg1 coding downstream 498904 37059803 ~ 37082618 (-)
XLOC_026621 CT573704.2 coding downstream 505709 37075698 ~ 37075813 (-)
XLOC_026619 NA coding downstream 609300 36969403 ~ 36972222 (-)
XLOC_026626 NA coding upstream 49293 37634100 ~ 37649389 (-)
XLOC_026627 gpatch8 coding upstream 77637 37662444 ~ 37699992 (-)
XLOC_026628 si:dkey-260c8.6 coding upstream 172578 37757385 ~ 37759996 (-)
XLOC_026629 baxa coding upstream 181666 37766473 ~ 37773800 (-)
XLOC_026630 baxa coding upstream 191682 37776489 ~ 37785873 (-)
XLOC_026618 CT573704.1 non-coding downstream 613529 36967871 ~ 36967993 (-)
XLOC_026617 NA non-coding downstream 627434 36953625 ~ 36954088 (-)
XLOC_026612 FO744883.1 non-coding downstream 825373 36756033 ~ 36756149 (-)
XLOC_026631 BX936420.1 non-coding upstream 941172 38525979 ~ 38529416 (-)
XLOC_026636 NA non-coding upstream 1386628 38971435 ~ 38975698 (-)
XLOC_026637 NA non-coding upstream 1527507 39112314 ~ 39113547 (-)
XLOC_026646 CU464118.1 non-coding upstream 1787066 39371873 ~ 39454903 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G197383 NA non-coding CI01000046 null 5381121 ~ 5384299 (+)