LOC110532949 (nitr3)


Basic Information

Item Value
gene id LOC110532949
gene name nitr3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19148102 ~ 19156589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532949
ATGGTTGATGTGCTAGCTGGAACGGAGTCTTCATCCATACGTCAAGAGAGTGGTCTCATGTCAGCCAGTGTTGAAGACATAGTGATTTTGCACTGCTTTCAAGAAAGTGACAAGGCAGTCTTGTTCTCTTGGTACAAGCAAACCTTGGGAGATAAACTTCAGTTCTTCTCAACTGTCATTAAGTTTGAAAGGAACGCAACATTCTACCATGAGTTTAAGGGTAAACCTCACTCCTCAGTGGAAAATGGCCAAAAAAAGATCACCTAAGGATCTCAGACATGCAGCTGATAGACTCTGGCACATACTATGTGGGAGCTCTTATAGCAACAATATGGAGTTTGGAGAAGGATCAAAGATAAAGATAAaAAACGTGACTGTGCTCCAGCAATCTGTGTCTGAGACGGTCCAGCCAGGAGACGCTGTGACTCTGAACTGTAAAATACACACTGAGACCTGTGCAGGAGAACACAGTGTCTATTGGTTCAGACATGGCTCAGGAGAAAATGACTGTGTGGAAGTCATAGAGGCCCTAGAGGATGACAGTGtcaccctcctgtctcagcctccaACCCCTCACACTATACAGTTCAGAAAGGAAATTATGATTATATATTGGACAATATTTTTGTTTGTTTGCTTCACAGGTTGTGCACTTAACAAGGATGTAATCCAACCAGACCCTGTGATAGTTACACGCCTGGGACAAAATGTATCTCTCACTTGCTTTTGTCAATCTAATTTGATGGTCAGAGTCGCTTGGTTCAAGCAAACTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTGTCGCACTCAAAATACCTtttatttcaacaattttacCAAGGACTTCAAGGAGACTAAACGCTTGAGTGTGGGGAGAGGTTTTGACAGCTCTAACCTGACCATCTCCAAGACAGAGTCAGGGGACACAGCTACATACTACTGTGGTGTTATGGAAGTCGGCAAAGTCATATTTGGAGAAGGAACTTCTTTAATTGTCAAAGGTTCAGAGTCCAACAGCATGTCTGTACTCTAGCAGCCTGTGTCTGAGTCAGTCCAGCCAGGAGACTCTGACTCTGAACTGTACAATACACTCCAAGACCTGTGCAGGAGAACATAGTGTCTATTGGTTCAGACATGGCTCAGGAGAATCCCATCCAGGAATCATTTACACCAATGGAGACAGGACTGATCAGTGTGAGAAGAGCCCTGAGGCTGGGTCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTTACTATTGTGCTGTGGCCTCATGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGACTGTTAGTGATATTTCTGACATTTCTTAAATGTTCTAACATTTTTTGCTATTCCTCTTAGGATAAGGAACATGATGACACACTCACGTCGGTCCAttacgctgctctgaatgtcatCCACAAGAAGCCAAAGACCCAGAGACAGAGGAGCACCATGGAGAGAGACACGGAGTACTCTGGGGTGAGGTGCCAAAACATGGATTGAAACATAGATTTACCTCCTTTAAGACTTGCATTGCTTTTTCATACACACtgtgtttttattattataattgtgCTAGAATTGCTTGTATT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106577749 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532949 True 1644 mRNA 0.44 7 19148102 19156589

Neighbor

gene id symbol gene type direction distance location
nitr2 nitr2 coding downstream 24084 19119500 ~ 19124018 (-)
tifa LOC106577687 coding downstream 62103 19084032 ~ 19085999 (-)
LOC118966012 NA coding downstream 77890 19066691 ~ 19070212 (-)
LOC110531672 LOC106577688 coding downstream 100629 19017546 ~ 19047473 (-)
LOC110531673 LOC106577689 coding downstream 130698 19010092 ~ 19017404 (-)
nitr3 nitr3 coding upstream 16046 19172635 ~ 19174378 (-)
LOC110512425 LOC106577746 coding upstream 21456 19178045 ~ 19179798 (-)
LOC110531690 NA coding upstream 39679 19196202 ~ 19197333 (-)
LOC110531677 LOC106577725 coding upstream 45364 19201953 ~ 19204332 (-)
LOC110531679 NA coding upstream 69108 19225697 ~ 19228686 (-)
G778697 NA non-coding downstream 35175 19112661 ~ 19112927 (-)
G778696 NA non-coding downstream 36113 19111700 ~ 19111989 (-)
G778694 NA non-coding downstream 38852 19108878 ~ 19109250 (-)
G778682 NA non-coding downstream 68783 19079105 ~ 19079319 (-)
G778679 NA non-coding downstream 70786 19077065 ~ 19077316 (-)
LOC110531685 LOC106577724 non-coding upstream 91216 19247704 ~ 19249648 (-)
G778787 NA non-coding upstream 120730 19277319 ~ 19278218 (-)
G778849 LOC106608711 non-coding upstream 241632 19398221 ~ 19442473 (-)
G778216 NA other downstream 789999 18355441 ~ 18358103 (-)
G776822 NA other downstream 1487619 17659690 ~ 17660483 (-)
G776820 NA other downstream 1488699 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1491777 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1492122 17655594 ~ 17655980 (-)
G780209 NA other upstream 661102 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 915407 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 1145489 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1774371 20930960 ~ 21272646 (-)
G782003 NA other upstream 2619129 21775718 ~ 21776210 (-)

Expression


Co-expression Network