LOC110512425 (LOC106577746)


Basic Information

Item Value
gene id LOC110512425
gene name LOC106577746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19178045 ~ 19179798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987515.1
ATGACAACTTTAAAGATGATCACACTGTGTCTGATATTTACACTTCTCGTAGAGATGGTTGATGTGCTAGCTGGAACTGAGTCTTCATCCATACGTCAAGAGAGTGGTCTCATGTCAGCCAACGTTGGAGACACAGTGGTTTTGCACTGCTTTCAAGAAAGTGACATGGCAGTATTGTTCTCTTGGTACAAGCAAACCTTGGGAGATAAACTTCAACTCTTCTCAACTGTCAATAAGTTTGAAAGGAACGCAACATTCTACCATGAGTTTAAGGATAACCCTCGCTTCTCGGTGGAAAATGGCCAAGAAAAGAATCACCTAAGGATCTCAGACATGCAGCTGTCAGATTCAGGCACTTACTACTGTGGGAGCTCTTATAGCAATAAGATGGAGTTTGGAGAAGGAGCCATTGTCATTGTAAAAGGGTCCAGAAACATGACTGTGCTCCAGCAATCTGTGTCTGAGTCAGTCCAGCCAGGAGACTCTGTGACACTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAATACAGTGTCTATTGGTTCCGACATGGCTCAGGAGAATCCCATCCAGGAATCATTTACACCCATGGAGATAGGAGTGATCAGTGTGAGAAGAGCCCTGGGGCTGGGTCTCCTACACAGAGCTGTGTCTTCAACCTCCCCAAGAGGAACCTCATCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGCAGATACTGTTTGGGAAAGGGACCAAGCTGGACATTGAGGGCCATAGAGCAGACCCTCTTCTCTTGTTGTACTGCCTGGGTGTAGCATTGGCTCTTTCATTCATCCTGATCATTGCACTTGCTAGCATCATGTACAAGATGAACAAGAGAAAGTGCAGAGAACTGGTCTCTCAGACAAGAGGTCCTACAGTTTCCCAGACAGACGCAGGGGCCGAAGATGCAGACAGTCTCCATTACGTAGCTCTGAATCTGAGCAACAAGAACAACAGGTCTAGAAGACAGAGAAGCAACATGGAGGAAGAGACGGTGTACTCTGGGATCAGACAGTAGAACTGGATGAATGAAACAGTTGTCATTGTATGCAAGATACCTC

Function

NR:

description
uncharacterized protein LOC109906461

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987515.1 True 1102 mRNA 0.47 6 19178045 19179798

Neighbor

gene id symbol gene type direction distance location
nitr3 nitr3 coding downstream 3667 19172635 ~ 19174378 (-)
LOC110532949 nitr3 coding downstream 21456 19148102 ~ 19156589 (-)
nitr2 nitr2 coding downstream 54027 19119500 ~ 19124018 (-)
tifa LOC106577687 coding downstream 92046 19084032 ~ 19085999 (-)
LOC118966012 NA coding downstream 107833 19066691 ~ 19070212 (-)
LOC110531690 NA coding upstream 16470 19196202 ~ 19197333 (-)
LOC110531677 LOC106577725 coding upstream 22155 19201953 ~ 19204332 (-)
LOC110531679 NA coding upstream 45899 19225697 ~ 19228686 (-)
LOC110532953 LOC106577743 coding upstream 61329 19241127 ~ 19242842 (-)
LOC110531685 LOC106577724 coding upstream 67906 19247704 ~ 19249648 (-)
G778697 NA non-coding downstream 65118 19112661 ~ 19112927 (-)
G778696 NA non-coding downstream 66056 19111700 ~ 19111989 (-)
G778694 NA non-coding downstream 68795 19108878 ~ 19109250 (-)
G778682 NA non-coding downstream 98726 19079105 ~ 19079319 (-)
G778679 NA non-coding downstream 100729 19077065 ~ 19077316 (-)
G778787 NA non-coding upstream 97521 19277319 ~ 19278218 (-)
G778849 LOC106608711 non-coding upstream 218423 19398221 ~ 19442473 (-)
G778216 NA other downstream 819942 18355441 ~ 18358103 (-)
G776822 NA other downstream 1517562 17659690 ~ 17660483 (-)
G776820 NA other downstream 1518642 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1521720 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1522065 17655594 ~ 17655980 (-)
G780209 NA other upstream 637893 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 892198 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 1122280 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1751162 20930960 ~ 21272646 (-)
G782003 NA other upstream 2595920 21775718 ~ 21776210 (-)

Expression


Co-expression Network