XLOC_026626


Basic Information

Item Value
gene id XLOC_026626
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37634100 ~ 37649389 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053075
GAAAAAGTTTGAATGAAGACCAAAATATTAACTACCATAAAATGCCACATGAGGTGTAAACATCAAAATCGACAGATTTTTCATAGCCTTGCAGTGCAGATGGCAGACTCTCCACAGAAAGAACGCAGACAAAAGATGGCAGATAAAGTGTCCTGTCCCCAGAGGCTAATAGACCTACCTGTTTGACCTGAATCACACAATcacattattaaattataactCCCTCCAAAAGCTCTCCAGGGGATGTGTGCGTGAGAAGAAGGCTGTGGACGCTGGGCTTTGGGGAAATGAAGGCTTTAGGATTCGTTATTAAACCAGTGCTGTATCATCCCTCACAGACCCCCTGCGGTTCCCCACAACAGCTTCTCCGTTCGGAAACCAAACGCTTCTGTGTGAAACCAATGTCAAACGGTAACTTATTCAAAAATAAGTCAAGCTATTAGTCTTTTTGTAGCGCTTTATTATGAATGTCATTTTTGAAGCATGTGATTGACTGTAgagcagctctacagatcctaaCTGAGCGAGCCAAAGGCGACAGTTGCAACCTTAACTCAACCAATTGACGTAAATGGTGAAACAGACATTAGCCAACTTGTCCATCATAACATAGCAGCTTGTCCATCCGCAATCTAAATGCTTCTGTGTAAAACCACCGTCAAACTGTaagtaatagttcacccaaaaatgaaaattactccagtcaccctcaagccatcctcTGTCTATATGACTTTATTCTATCAGACAATCTGTAATTTGAATGGGATGCTGACAAGGAAGGcgcggatccaaatgcaagtttaTTGAGAATGATCAGGGAAGCTTTggtcacaatcaggagcaaacagatgtatgcaggcaAATTCAGAGTCTGAACAAAAGTCTTGGTAAAATATACATTCAATAGGTCAGTataggcaggcagcagacaacataaacaaataaacaagttgAGGGTCAAAACCATggcaaagcaaggcaaggaaaatgcatTGTAATGTTCACAGAGCTgtttacaagactcagcaaagaggtATGTGCGTGCACTGTATTAAAGTCCAtctaatcagtctttgagcagctcccagctgtgtgagtgtaatcagtcatGATCTGgaacagttgtgtgtgtgtgtgtgtgtggtgcatgactggaattTGTAGTCCGTATACCAGTGGATTTGTAGTCCTTTAGTGATTTGCCAGgactagatcactggtgattgtgactcAATTCCAGTCAGAGTAGTTTGCGTTTTATCCTGGATCTCCCATGCAGGcccatttttttacatttccaagTGCATAAATCTGTTGTAAACATAACCAATATGCTGCCAGGGGGCTTAATTCATGTGTTATGAAGCAGATCGGTGtgtttttttgacaaaaaatatataatattttttaattataaactcAGGCAGCATGGTgatgcagtggttagcactgtatttgcatgttctccttgtgttcgggtgggtttcctccgggtgctctggtttcttccacaatccaaagacatgcattaacggtgtattgaataaactaagttggctgtagtgtgtaAGTGGGAgggtgaatgagagtatatgggtgtttcccagtactgggttgcggctggaatggcatccgctgtgtaaaacctgtgcttgataagttggcagtttattccgctgtggccacccctgagaaatcagggactaagccgaaggaaaataaattattaaatgaataattattagaattattattttttaaccattCTTTTATAGGACAGTATAGTGGAGACAGGAAAGGTTGTGTGAGTATAGAGTGAGcagaaggatcagcaaaggacctcgagctgggaatcgaactcgggtcacagTGAGCACTTCGGTGCTATATATCGACGCATTAACAACTAGGCCATCAGCACAGATAAATGCGCATTTTCGATTACTTCTTGGCCGACCTCTGACTTCACGTATGTAGGCACGAGCCGA
>TCONS_00051868
AGCGCCAGCAGTCTACGGCGGCGAGGTGTAAACATCAAAATCGACAGATTTTTCATAGCCTTGCAGTGCAGATGGCAGACTCTCCACAGAAAGAACGCAGACAAAAGATGGCAGATAAAGTGTCCTGTCCCCAGAGGCTAATAGACCTACCTGTTTGACCTGAATCACACAATcacattattaaattataactCCCTCCAAAAGCTCTCCAGGGGATGTGTGCGTGAGAAGAAGGCTGTGGACGCTGGGCTTTGGGGAAATGAAGGCTTTAGGATTCGTTATTAAACCAGTGCTGTATCATCCCTCACAGACCCCCTGCGGTTCCCCACAACAGCTTCTCCGTTCGGAAACCAAACGCTTCTGTGTGAAACCAATGTCAAACGGTAACTTATTCAAAAATAAGTCAAGCTATTAGTCTTTTTGTAGCGCTTTATTATGAATGTCATTTTTGAAGCATGTGATTGACTGTAgagcagctctacagatcctaaCTGAGCGAGCCAAAGGCGACAGTTGCAACCTTAACTCAACCAATTGACGTAAATGGTGAAACAGACATTAGCCAACTTGTCCATCATAACATAGCAGCTTGTCCATCCGCAATCTAAATGCTTCTGTGTAAAACCACCGTCAAACTGTaagtaatagttcacccaaaaatgaaaattactccagtcaccctcaagccatcctcTGTCTATATGACTTTATTCTATCAGACAATCTGTAATTTGAATGGGATGCTGACAAGGAAGGcgcggatccaaatgcaagtttaTTGAGAATGATCAGGGAAGCTTTggtcacaatcaggagcaaacagatgtatgcaggcaAATTCAGAGTCTGAACAAAAGTCTTGGTAAAATATACATTCAATAGGTCAGTataggcaggcagcagacaacataaacaaataaacaagttgAGGGTCAAAACCATggcaaagcaaggcaaggaaaatgcatTGTAATGTTCACAGAGCTgtttacaagactcagcaaagaggtATGTGCGTGCACTGTATTAAAGTCCAtctaatcagtctttgagcagctcccagctgtgtgagtgtaatcagtcatGATCTGgaacagttgtgtgtgtgtgtgtgtgtggtgcatgactggaattTGTAGTCCGTATACCAGTGGATTTGTAGTCCTTTAGTGATTTGCCAGgactagatcactggtgattgtgactcAATTCCAGTCAGAGTAGTTTGCGTTTTATCCTGGATCTCCCATGCAGGcccatttttttacatttccaagTGCATAAATCTGTTGTAAACATAACCAATATGCTGCCAGGGGGCTTAATTCATGTGTTATGAAGCAGATCGGTGtgtttttttgacaaaaaatatataatattttttaattataaactcAGGCAGCATGGTgatgcagtggttagcactgtatttgcatgttctccttgtgttcgggtgggtttcctccgggtgctctggtttcttccacaatccaaagacatgcattaacggtgtattgaataaactaagttggctgtagtgtgtaAGTGGGAgggtgaatgagagtatatgggtgtttcccagtactgggttgcggctggaatggcatccgctgtgtaaaacctgtgcttgataagttggcagtttattccgctgtggccacccctgagaaatcagggactaagccgaaggaaaataaattattaaatgaataattattagaattattattttttaaccattCTTTTATAGGACAGTATAGTGGAGACAGGAAAGGTTGTGTGAGTATAGAGTGAGcagaaggatcagcaaaggacctcgagctgggaatcgaactcgggtcacagTGAGCACTTCGGTGCTATATATCGACGCATTAACAACTAGGCCATCAGCACAGATAAATGCGCATTTTCGATTACTTCTTGGCCGACCTCTGACTTCACGTATGTAGGCACGAGCCGA
>TCONS_00051869
agcatatggcAGCATAGTTGGTGTAAACATCAAAATCGACAGATTTTTCATAGCCTTGCAGTGCAGATGGCAGACTCTCCACAGAAAGAACGCAGACAAAAGATGGCAGATAAAGTGTCCTGTCCCCAGAGGCTAATAGACCTACCTGTTTGACCTGAATCACACAATcacattattaaattataactCCCTCCAAAAGCTCTCCAGGGGATGTGTGCGTGAGAAGAAGGCTGTGGACGCTGGGCTTTGGGGAAATGAAGGCTTTAGGATTCGTTATTAAACCAGTGCTGTATCATCCCTCACAGACCCCCTGCGGTTCCCCACAACAGCTTCTCCGTTCGGAAACCAAACGCTTCTGTGTGAAACCAATGTCAAACGGTAACTTATTCAAAAATAAGTCAAGCTATTAGTCTTTTTGTAGCGCTTTATTATGAATGTCATTTTTGAAGCATGTGATTGACTGTAgagcagctctacagatcctaaCTGAGCGAGCCAAAGGCGACAGTTGCAACCTTAACTCAACCAATTGACGTAAATGGTGAAACAGACATTAGCCAACTTGTCCATCATAACATAGCAGCTTGTCCATCCGCAATCTAAATGCTTCTGTGTAAAACCACCGTCAAACTGTaagtaatagttcacccaaaaatgaaaattactccagtcaccctcaagccatcctcTGTCTATATGACTTTATTCTATCAGACAATCTGTAATTTGAATGGGATGCTGACAAGGAAGGcgcggatccaaatgcaagtttaTTGAGAATGATCAGGGAAGCTTTggtcacaatcaggagcaaacagatgtatgcaggcaAATTCAGAGTCTGAACAAAAGTCTTGGTAAAATATACATTCAATAGGTCAGTataggcaggcagcagacaacataaacaaataaacaagttgAGGGTCAAAACCATggcaaagcaaggcaaggaaaatgcatTGTAATGTTCACAGAGCTgtttacaagactcagcaaagaggtATGTGCGTGCACTGTATTAAAGTCCAtctaatcagtctttgagcagctcccagctgtgtgagtgtaatcagtcatGATCTGgaacagttgtgtgtgtgtgtgtgtgtggtgcatgactggaattTGTAGTCCGTATACCAGTGGATTTGTAGTCCTTTAGTGATTTGCCAGgactagatcactggtgattgtgactcAATTCCAGTCAGAGTAGTTTGCGTTTTATCCTGGATCTCCCATGCAGGcccatttttttacatttccaagTGCATAAATCTGTTGTAAACATAACCAATATGCTGCCAGGGGGCTTAATTCATGTGTTATGAAGCAGATCGGTGtgtttttttgacaaaaaatatataat

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098000

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053075 False 1991 lncRNA 0.42 4 37634100 37649261
TCONS_00051868 False 1963 lncRNA 0.43 4 37634100 37649389
TCONS_00051869 True 1372 lncRNA 0.42 4 37634686 37639858

Neighbor

gene id symbol gene type direction distance location
XLOC_026624 arf2a coding downstream 45245 37558491 ~ 37588855 (-)
XLOC_026625 NA coding downstream 49293 37581522 ~ 37584807 (-)
XLOC_026623 SRCIN1 coding downstream 157625 37235924 ~ 37476475 (-)
XLOC_026622 mlx coding downstream 485506 37135516 ~ 37148594 (-)
XLOC_026620 tubg1 coding downstream 551482 37059803 ~ 37082618 (-)
XLOC_026627 gpatch8 coding upstream 13055 37662444 ~ 37699992 (-)
XLOC_026628 si:dkey-260c8.6 coding upstream 107996 37757385 ~ 37759996 (-)
XLOC_026629 baxa coding upstream 117084 37766473 ~ 37773800 (-)
XLOC_026630 baxa coding upstream 127100 37776489 ~ 37785873 (-)
XLOC_026631 BX936420.1 coding upstream 876590 38525979 ~ 38529416 (-)
XLOC_026621 CT573704.2 non-coding downstream 558287 37075698 ~ 37075813 (-)
XLOC_026619 NA non-coding downstream 661878 36969403 ~ 36972222 (-)
XLOC_026618 CT573704.1 non-coding downstream 666107 36967871 ~ 36967993 (-)
XLOC_026617 NA non-coding downstream 680012 36953625 ~ 36954088 (-)
XLOC_026636 NA non-coding upstream 1322046 38971435 ~ 38975698 (-)
XLOC_026637 NA non-coding upstream 1462925 39112314 ~ 39113547 (-)
XLOC_026646 CU464118.1 non-coding upstream 1722484 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 1912395 39561784 ~ 39563301 (-)

Expression


Co-expression Network