LOC110531676 (nitr3)


Basic Information

Item Value
gene id LOC110531676
gene name nitr3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19290034 ~ 19292357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987517.1
AAAGGAAATGATGATTATATATTGGACAATATTTTTGTTTTACGCCAATTTGGGTTGTGCACTTAACAAGGATGTAATCCAACCAGACCCTGTGATAGTTACACAACTGGGACAAAGTGTATCTCTCACTTGCTTTTGTCATTCTAATTTGATAGTCAGAGTCTCTTGGTTCAAGCAAACTCTTGGACAGAAGCCTCTTCTCATGGCATCATCATTTTATCACACTCAAAATAATCTTTATTCCAACAACTTTAACAAAGACTTTACTGAGACTAAACGTTTGAGTGTGAAGAGAGGAGTTGACAGCTTCAACCTGACCATCTCCAAGACAGAGTCAAGGGACTCAGCTACATACTACTGTGTTGCTTTGGTAGTAAGCAAAGTCAAATTTGGAGAAGGAACTGTTTTAATTGTCGAAGGTTCAGAGTCCAACAGCATGTCTGTGCTCCAGCAGCCTGTGTCTGAGTCAGTCCAGCCAGGGGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTTTGCAGGAGAACACAGTGTCTATTGGTTCAGACATGGCTCAGGAAAATCCCATCCAGGAATCATTTACAACAATGGAGACAGGAGAGATCAGTGTGAGAAGAGCCCTGAGGCTTGTCCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGTTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTCGGGAACAGGACCAAGCTGAACATCGAAGTTTCAGACCTGTTGGGCGATCAGAGTAATCTTCTTTTCCTCATCATTATATCTTGcctgacaactactgtgattgtGAGTGTGATTGTCAACGTTATCCTCTGTTTGAGAATGAAGAGGTCACAATGTGAACACTGTACAGCAGGAACCCCTTTTCAACAATGCCACTATGGGAATCCTCATTCCAACACCTCAGACCAACAGCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTATTCTGGTGTGAGTTATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCTTTTTGAGCTagactgtgtctgtgtgacttGGCTGTTTTGTACTTTCCTCATTTGTTATACAATGTAATAGTCGGGACAAGCAGAAGAGACTGTCACTGCATTGGCATACTCTCCTAATATCAATGTAGAATCATTCAGATGCAGACTTGTATAATAATTGTTCAGCAAGTGTGAAAGCTGACACTAGGATGGCTTCATAAGTATAAAATCATCAGCAATAGTGGCTGAGGTTGACTGACTGGATATATCTGCTTTTGCAAAAAATACTGTATGTTTAATGATTTTGCAAATGTCTGAACTCTTCCTTTTGATGGTAATGGTTGTAACATGGAACTCTGTGAACTGTCTTTATGCTTGTGCGATAtttaaataaacatgtttttagtT
>XM_036987518.1
AAAGGAAATGATGATTATATATTGGACAATATTTTTGTTTTACGCCAATTTGGGTTGTGCACTTAACAAGGATGTAATCCAACCAGACCCTGTGATAGTTACACAACTGGGACAAAGTGTATCTCTCACTTGCTTTTGTCATTCTAATTTGATAGTCAGAGTCTCTTGGTTCAAGCAAACTCTTGGACAGAAGCCTCTTCTCATGGCATCATCATTTTATCACACTCAAAATAATCTTTATTCCAACAACTTTAACAAAGACTTTACTGAGACTAAACGTTTGAGTGTGAAGAGAGGAGTTGACAGCTTCAACCTGACCATCTCCAAGACAGAGTCAAGGGACTCAGCTACATACTACTGTGTTGCTTTGGTAGTAAGCAAAGTCAAATTTGGAGAAGGAACTGTTTTAATTGTCGAAGGTTCAGAGTCCAACAGCATGTCTGTGCTCCAGCAGCCTGTGTCTGAGTCAGTCCAGCCAGGGGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTTTGCAGGAGAACACAGTGTCTATTGGTTCAGACATGGCTCAGGAAAATCCCATCCAGGAATCATTTACAACAATGGAGACAGGAGAGATCAGTGTGAGAAGAGCCCTGAGGCTTGTCCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGTTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTCGGGAACAGGACCAAGCTGAACATCGAAGTTTCAGACCTGTTGGGCGATCAGAGTAATCTTCTTTTCCTCATCATTATATCTTGcctgacaactactgtgattgtGAGTGTGATTGTCAACGTTATCCTCTGTTTGAGAATGAAGAGGTCACAATGTGAACACTGTACAGGAACCCCTTTTCAACAATGCCACTATGGGAATCCTCATTCCAACACCTCAGACCAACAGCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTATTCTGGTGTGAGTTATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCTTTTTGAGCTagactgtgtctgtgtgacttGGCTGTTTTGTACTTTCCTCATTTGTTATACAATGTAATAGTCGGGACAAGCAGAAGAGACTGTCACTGCATTGGCATACTCTCCTAATATCAATGTAGAATCATTCAGATGCAGACTTGTATAATAATTGTTCAGCAAGTGTGAAAGCTGACACTAGGATGGCTTCATAAGTATAAAATCATCAGCAATAGTGGCTGAGGTTGACTGACTGGATATATCTGCTTTTGCAAAAAATACTGTATGTTTAATGATTTTGCAAATGTCTGAACTCTTCCTTTTGATGGTAATGGTTGTAACATGGAACTCTGTGAACTGTCTTTATGCTTGTGCGATAtttaaataaacatgtttttagtT

Function

NR:

description
uncharacterized protein LOC109906837

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987517.1 False 1539 mRNA 0.42 6 19290034 19292357
XM_036987518.1 True 1536 mRNA 0.42 6 19290034 19292357

Neighbor

gene id symbol gene type direction distance location
LOC110532954 LOC106577681 coding downstream 28950 19259903 ~ 19261084 (-)
LOC110531685 LOC106577724 coding downstream 40386 19247704 ~ 19249648 (-)
LOC110532953 LOC106577743 coding downstream 47192 19241127 ~ 19242842 (-)
LOC110531679 NA coding downstream 61348 19225697 ~ 19228686 (-)
LOC110531677 LOC106577725 coding downstream 85702 19201953 ~ 19204332 (-)
LOC110532955 NA coding upstream 400 19292757 ~ 19293496 (-)
LOC118966014 LOC106577677 coding upstream 17702 19310059 ~ 19310970 (-)
LOC110532957 LOC106577671 coding upstream 31375 19323732 ~ 19324732 (-)
LOC110531695 LOC106577660 coding upstream 570426 19862783 ~ 19868337 (-)
LOC110531696 LOC106577660 coding upstream 577081 19869438 ~ 19872456 (-)
G778787 NA non-coding downstream 11816 19277319 ~ 19278218 (-)
LOC110531690 NA non-coding downstream 92764 19196202 ~ 19197333 (-)
G778697 NA non-coding downstream 177107 19112661 ~ 19112927 (-)
G778849 LOC106608711 non-coding upstream 105864 19398221 ~ 19442473 (-)
G778867 NA non-coding upstream 107216 19399573 ~ 19443353 (-)
G779050 NA non-coding upstream 299495 19591852 ~ 19592172 (-)
G779053 NA non-coding upstream 302681 19595038 ~ 19595451 (-)
G779055 NA non-coding upstream 303096 19595453 ~ 19595782 (-)
G778216 NA other downstream 931931 18355441 ~ 18358103 (-)
G776822 NA other downstream 1629551 17659690 ~ 17660483 (-)
G776820 NA other downstream 1630631 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1633709 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1634054 17655594 ~ 17655980 (-)
G780209 NA other upstream 525334 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 779639 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 1009721 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1638603 20930960 ~ 21272646 (-)
G782003 NA other upstream 2483361 21775718 ~ 21776210 (-)

Expression


Co-expression Network