LOC118966014 (LOC106577677)


Basic Information

Item Value
gene id LOC118966014
gene name LOC106577677
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19310059 ~ 19310970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118966014
TCTTTATCTTGATCTTTAATCCATGTTTGTTTGGATTTACAGTTTGTGCATTAAACAAGGACATTGTTCAACCAAACCCAGTGATGGTTACTCACCGGGGAGCTAGTGTGAATATCACTTGCTTTTGGCCAACTGATGTGAATACCGATGTTGTTTGGTTCAAGCAGACTCTTGGACAGAAACCCCTTCTCATGACATCGACACTTTCCAGTGGACAATATTTTTACTTCAACAACTTTACCAAGAATTTCACTGAGACTAAACATCTGAGTGTGAAGAAAGGAGTTGACAGCTTTAACCTGACCATCTCTAAGACAGAGCCATGGGACTCTGCTACATACTACTGTGGTGCCATGAAAGTGGGCAAAGTCAAATTTGGAGATGGAACTTTATTGATTGTAAAAGGTAACTTAACTTCCTTCCCTAATTTGGGATTTAAATTTTGCACCATTAAATTAGAAATATACTTTAGAATTTGGCaataaatgtacagtatatatcagGCAAATACAATTTAAACACTATGATCTTACTCCGTCACTCTCTTCAGGTTCAGAGTCCAACAGCATGTCTGTGCACCAGCAGCCTGTGTCTGAGTCAGTCCAGCCAGGAGACTCTGTGACTCTGAACTGTACAATTCACACTGAGACCTGTGCAGGAGAACACCGTGTCTTTTGGTTCAGACATGGCTCAGGAGAATCCCGTCCAGGAATCCTTTACACCAATAGAGACAGGAGTGATCAGTGTGAGAATTGCACAGAGGCTGGGTCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTTTCTGATGCTGGGACTTACTACTGTGCAGTGGCCTCATGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGACCGTAAATAATCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118966014 True 912 mRNA 0.43 1 19310059 19310970

Neighbor

gene id symbol gene type direction distance location
LOC110532955 NA coding downstream 16563 19292757 ~ 19293496 (-)
LOC110531676 nitr3 coding downstream 17702 19290034 ~ 19292357 (-)
LOC110532954 LOC106577681 coding downstream 48975 19259903 ~ 19261084 (-)
LOC110531685 LOC106577724 coding downstream 60411 19247704 ~ 19249648 (-)
LOC110532953 LOC106577743 coding downstream 67217 19241127 ~ 19242842 (-)
LOC110532957 LOC106577671 coding upstream 12762 19323732 ~ 19324732 (-)
LOC110531695 LOC106577660 coding upstream 551813 19862783 ~ 19868337 (-)
LOC110531696 LOC106577660 coding upstream 558468 19869438 ~ 19872456 (-)
LOC110531700 LOC106577652 coding upstream 638877 19949847 ~ 19961244 (-)
LOC110531702 LOC106577654 coding upstream 655999 19966969 ~ 19972714 (-)
G778787 NA non-coding downstream 31841 19277319 ~ 19278218 (-)
LOC110531677 LOC106577725 non-coding downstream 107415 19201953 ~ 19204332 (-)
LOC110531690 NA non-coding downstream 112789 19196202 ~ 19197333 (-)
G778697 NA non-coding downstream 197132 19112661 ~ 19112927 (-)
G778849 LOC106608711 non-coding upstream 87251 19398221 ~ 19442473 (-)
G778867 NA non-coding upstream 88603 19399573 ~ 19443353 (-)
G779050 NA non-coding upstream 280882 19591852 ~ 19592172 (-)
G779053 NA non-coding upstream 284068 19595038 ~ 19595451 (-)
G779055 NA non-coding upstream 284483 19595453 ~ 19595782 (-)
G778216 NA other downstream 951956 18355441 ~ 18358103 (-)
G776822 NA other downstream 1649576 17659690 ~ 17660483 (-)
G776820 NA other downstream 1650656 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1653734 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1654079 17655594 ~ 17655980 (-)
G780209 NA other upstream 506721 19817691 ~ 19824571 (-)
LOC110531704 LOC106608762 other upstream 761026 20022194 ~ 20075490 (-)
LOC110531717 LOC106577635 other upstream 991108 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1619990 20930960 ~ 21272646 (-)
G782003 NA other upstream 2464748 21775718 ~ 21776210 (-)

Expression


Co-expression Network