LOC110532958 (LOC106577717)


Basic Information

Item Value
gene id LOC110532958
gene name LOC106577717
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19340727 ~ 19343839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987523.1
ATGATTATATATTGGACAATCTTTTTGTATTATGCCAATTTGGGTTGTGCACTTAACAAGGATGTAATCCAACCAGACCCTGTGATAGTTACACAACTGGGACAAAGTGTATCACTCAATTGCTTTTGTCGATCTCAATTGATCAGAGTCTCTTGGTTCAAGCAAACTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATGGCAGTGAAAATAGTTTCTATTTCAACAACTTTACCGAGGACTTTACTGAGACTAAACGTTTGAGTGTGAACAGAGGAGTTGACAGCTGTAACCTGACCATCTCCAAGACAGTGTCGGGGGACTCATCTACATACTACTGTGTTAGTTTGTCAGCGAGGGAAGCCAAATTTGGAGAAGGAACTGTTTTAATTGTCAAAGATTCAGGTTCCAACAGCATGTCTGTGCTCCAGCAGCCTGTGTCTGAGTCAGTTCAGCCAGGAGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAACACAGTGTCTTTTGGTTCAGACATGGCTCAGGAAAATCCCATCCAGGAATAATTTATACCCATGGAGACAGTAATGGTCAGTGTGAGAAGAGCCCTGAGGCTGAGTCTCCTACACAGAGCTGTGTCTACAGCCTCCCCAAGAAGAACCTCAGCCTCTCTGATGCTGGGACTTACTACTGTGCTATGGCCTCATGTGGGGAGATACTATTTGGGAATGGGACCAAACTGGAAATGGACTATGGTTGTAAGGAGTACCCTGTTCTCTTGGTGTACTGCCTGGGTGTAGCGTTGGCTCTTTGTGGCATCATCATCATTGTCCTTGGTTGTGTTACTTACAAAATGACCAAGAAAATCTCTCTGCTGTCCAGAGGAACGCACCCTCAGCCAAGTGGCCCGGCAGTCCACAGTTCTTATAACCAGGATCAAAAAGACAACGACACACTCACGTCGGTCCAttacgctgctctgaatgtcatCCACAAGAAGCCAAAGACCCGGAGACAGAAGAGAGCCATGGAGAGAGACACTGTGTACTCTGGGGTGAGGTGCCAAAACACGGACTGAAAAGA

Function

NR:

description
uncharacterized protein LOC109906239

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987523.1 True 1088 mRNA 0.46 6 19340727 19343839

Neighbor

gene id symbol gene type direction distance location
LOC110531678 LOC106577718 coding upstream 2165 19336641 ~ 19338562 (+)
LOC118966013 NA coding upstream 145995 19193597 ~ 19194732 (+)
LOC118966168 LOC106577681 coding upstream 195864 19131879 ~ 19144863 (+)
LOC110531675 NA coding upstream 232820 19093068 ~ 19107907 (+)
rbm4b LOC106577685 coding upstream 234739 19087663 ~ 19105988 (+)
LOC110532960 LOC106577747 coding downstream 20841 19364680 ~ 19370927 (+)
LOC110531683 LOC106577670 coding downstream 52128 19395967 ~ 19443151 (+)
LOC110531684 LOC106577681 coding downstream 111873 19455712 ~ 19457543 (+)
LOC110532963 LOC106577673 coding downstream 129605 19473444 ~ 19477681 (+)
LOC110531681 LOC106577677 coding downstream 160126 19503965 ~ 19506500 (+)
G777889 NA non-coding upstream 31297 19309195 ~ 19309430 (+)
G777865 NA non-coding upstream 63920 19276224 ~ 19276807 (+)
G777707 NA non-coding upstream 263960 19076112 ~ 19076767 (+)
LOC110532947 LOC106577684 non-coding upstream 266169 19070843 ~ 19074558 (+)
G777757 NA non-coding upstream 275378 19065126 ~ 19065349 (+)
G777913 NA non-coding downstream 781 19344620 ~ 19349872 (+)
G778967 NA non-coding downstream 201232 19545071 ~ 19555880 (+)
G779052 NA non-coding downstream 251349 19595188 ~ 19595413 (+)
G779083 NA non-coding downstream 292469 19636308 ~ 19706947 (+)
LOC110531664 LOC106577696 other upstream 683153 18656177 ~ 18673318 (+)
G777396 NA other upstream 840709 18499614 ~ 18500018 (+)
G777165 NA other upstream 1232245 18108019 ~ 18108482 (+)
G777113 NA other upstream 1335059 18003267 ~ 18005668 (+)
G777111 NA other upstream 1338545 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 473849 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 532429 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 665677 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 695772 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 735597 20079382 ~ 20082084 (+)

Expression


Co-expression Network