LOC110532960 (LOC106577747)


Basic Information

Item Value
gene id LOC110532960
gene name LOC106577747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19364680 ~ 19370927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989270.1
AtggCGGGGACCCTTTCTCAGCATAGCCAGTATGGGAAGCTTCATGTCAAGACATCAGACCAACAGCTCCCCAGTGACAATGATGCCCTGAACTATTCTGCCCTGAAGCTCACTGACAAGAAGAGTACCAAGCCCAGGAGACAGAGgattgaacagagagaggaagaaaccatCTGCCCTGGTTGTGCGCTTAAAAATGATGTAATCCAACCAGACCCTTTGATAGTTACAAATCTGGGACAAAATGTATCTCTCACTTGCTTTTGTCGATCTAATTTGATAGTCAGAGTCTCTTGGTTCAAGCAAACTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCGCACTCAAAATACCTtttatttcaacaattttacCAAGGACTTCAAGGAGACTAAACGTTTGAGTGTGAAGAGAGGAGTTGGCAGCTCTAACCTGACCATCTCCAAGACAGAGTCAGGTGACTCAGCTACATACTACTGTGGTGCTATGAAAGCGGGCCAAGTCAAATTTGGAAAAGGAACTGTTTTAATTGTCAAAGGTTCAGAGTCCAACAGCATGTATGTACTCCAGCAACCTGTGTCTGAGTCAGTCCAGCCAGGAGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCTGGAGGACACAGTATCTATTGGTTCAGACATGGCTCAGGAGAATCCCGTCCAGGAATAATTTACACCCACGGAGACAGTAGTGAACAGTGTGAGGAGAGCCCTGAGGCTGGGTCTCCTACAAAGAGATTTGTCTATAATCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTTACTATTGCGCTGTGGCATCATTTGGAGAGATACTGTTTGGGAACGGTACCAAGCTGGACGTTGACTATGGTTGTAAGGAGGACCATGTTTTCTTGGTGTACTGCCTGGGTGTGGCGTTGGCTCTTTGTGTCATCCTCATCGTTGTCcttggttgtgttttgtataAGTTTACGAAGAAAACCTCTCTGCTGTGCAGCGGAAAGCATCCTCAGTCAGGTAGTCCGGCAGTCCCCAGTTGTCATAACCAGGATCAAGAACACGATGACACACTCACATCGGTCCAttacgctgctctgaatgtcatCCACATGAAGCCAAAGACCCAGAGACAGAGGAGCACCATGGAGAGAGACACTGTGTACTCTGGGCTGAGGTGCCAAAACATGGTTTGAAATGTCAACTTTTATTCCGTAAGGACTTGCATCGCTTTTTCTCTTATACACTGCTTTTTATCATTATAATTGTGTTACAATTGCTTATATTCTGTCAA

Function

NR:

description
uncharacterized protein LOC110532960

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989270.1 True 1322 mRNA 0.46 8 19364680 19370927

Neighbor

gene id symbol gene type direction distance location
LOC110532958 LOC106577717 coding upstream 20841 19340727 ~ 19343839 (+)
LOC110531678 LOC106577718 coding upstream 26118 19336641 ~ 19338562 (+)
LOC118966013 NA coding upstream 169948 19193597 ~ 19194732 (+)
LOC118966168 LOC106577681 coding upstream 219817 19131879 ~ 19144863 (+)
LOC110531675 NA coding upstream 256773 19093068 ~ 19107907 (+)
LOC110531683 LOC106577670 coding downstream 25040 19395967 ~ 19443151 (+)
LOC110531684 LOC106577681 coding downstream 84785 19455712 ~ 19457543 (+)
LOC110532963 LOC106577673 coding downstream 102517 19473444 ~ 19477681 (+)
LOC110531681 LOC106577677 coding downstream 133038 19503965 ~ 19506500 (+)
LOC110531687 LOC106577672 coding downstream 198327 19569254 ~ 19571207 (+)
G777913 NA non-coding upstream 14808 19344620 ~ 19349872 (+)
G777889 NA non-coding upstream 55250 19309195 ~ 19309430 (+)
G777865 NA non-coding upstream 87873 19276224 ~ 19276807 (+)
G777707 NA non-coding upstream 287913 19076112 ~ 19076767 (+)
LOC110532947 LOC106577684 non-coding upstream 290122 19070843 ~ 19074558 (+)
G778967 NA non-coding downstream 174144 19545071 ~ 19555880 (+)
G779052 NA non-coding downstream 224261 19595188 ~ 19595413 (+)
G779083 NA non-coding downstream 265381 19636308 ~ 19706947 (+)
G779137 NA non-coding downstream 393001 19763928 ~ 19764140 (+)
LOC110531664 LOC106577696 other upstream 707106 18656177 ~ 18673318 (+)
G777396 NA other upstream 864662 18499614 ~ 18500018 (+)
G777165 NA other upstream 1256198 18108019 ~ 18108482 (+)
G777113 NA other upstream 1359012 18003267 ~ 18005668 (+)
G777111 NA other upstream 1362498 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 446761 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 505341 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 638589 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 668684 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 708509 20079382 ~ 20082084 (+)

Expression


Co-expression Network