LOC110531683 (LOC106577670)


Basic Information

Item Value
gene id LOC110531683
gene name LOC106577670
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19395967 ~ 19443151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053201.1
GTCCTTGGTAGCATCATGTACAAGATGAGCAAGAGAAAGTGTCTGCAGTGTAGAGGACCCGTCTCTCAGACAAGAGGTCCAGCAGTCTCCTCTTCAGATCCAGGGCCCAAGATGCAGACAGTTTCCATGACGTATTCTGAAACTGAGCAACAAGAAGAACAGATTGGAATGCTTCTCAGCAAAGCCAGTATGGGAATCGTTATGCCAACTCGTCAGACCAACAGTGACGATGATGCCCTGAACTATACTACCCTGATGTTCACTGAAATGAAGAGTACCAAGcccaggagacagaggagagaacagaggaagaaACCATCTACTCTGGTTGACTCATCAAGACAGGATGTGACATGTTGTGCACTTAACAAGGATGTAATCCAAACAGACCCTGTGATAGTTACACGCCTGGGACAAAGTGTAACTCTCACATGCTTTTGTCAACTTGATTTGCTGATCAGAGTCTCTTGGTTCAAGCAATCTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCTCTCTAAACATAGTTTGCATTTTACCAAGGACTTTAATGAGACTAAACGTTTAAGTGTGAAGAGAGGAGTTGACAGCTTTAACTTGACCATCTCAAAGACAGAGTCAGGGGACTCAGCTATATACTACTGTGGTGCTATGGAAGCGGGCCAAGTCACATTTGGAGAAGGAACATTTTTAATTGTCAAAGATTCAGGGTCCAACAGCATGTCTGTGCTTCAGCAGCCTTTGTCTGAGTCAGTTCAGCTAGGAGAATCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAGTACAGTGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCCTTAGAGACAAGAGTGATTGGTGTGAGAAAAGTCCAGAGGCTTGTCCTCCTGAGGCTGGGTCTCCTACACAGAGTTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGAAGAGGTCACGATGTGAACACTGTGCAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCcaacaccacagaccaacagCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTACTCTGGTGTGAGTCATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCC
>XM_036987519.1
GTCCTTGGTAGCATCATGTACAAGATGAGCAAGAGAAAGTGTCTGCAGTGTAGAGGACCCGTCTCTCAGACAAGAGGTCCAGCAGTCTCCTCTTCAGATCCAGGGCCCAAGATGCAGACAGTTTCCATGACGTATTCTGAAACTGAGCAACAAGAAGAACAGATTGGAATGCTTCTCAGCAAAGCCAGTATGGGAATCGTTATGCCAACTCGTCAGACCAACAGTGACGATGATGCCCTGAACTATACTACCCTGATGTTCACTGAAATGAAGAGTACCAAGcccaggagacagaggagagaacagaggaagaaACCATCTACTCTGGTTGACTCATCAAGACAGGATGTGACATGTTGTGCACTTAACAAGGATGTAATCCAAACAGACCCTGTGATAGTTACACGCCTGGGACAAAGTGTAACTCTCACATGCTTTTGTCAACTTGATTTGCTGATCAGAGTCTCTTGGTTCAAGCAATCTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCTCTCTAAACATAGTTTGCATTTTACCAAGGACTTTAATGAGACTAAACGTTTAAGTGTGAAGAGAGGAGTTGACAGCTTTAACTTGACCATCTCAAAGACAGAGTCAGGGGACTCAGCTATATACTACTGTGGTGCTATGGAAGCGGGCCAAGTCACATTTGGAGAAGGAACATTTTTAATTGTCAAAGATTCAGGGTCCAACAGCATGTCTGTGCTTCAGCAGCCTTTGTCTGAGTCAGTTCAGCTAGGAGAATCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAGTACAGTGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCCTTAGAGACAAGAGTGATTGGTGTGAGAAAAGTCCAGAGGCTTGTCCTCCTGAGGCTGGGTCTCCTACACAGAGTTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGAAGTTTCAGACCTGTTGGGTGATAAGAGTAATCTTGTTTTCTTCGTATTTATATCTGGCCTGACAACTGCTGTGATTCTGAGTGTGATTGTCAACATTATCCTCTGTGTGATAATGAAGAGGTCACGATGTGAACACTGTGCAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCcaacaccacagaccaacagCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTACTCTGGTGTGAGTCATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCACTTTGAGCTTTACTGTGTCCGTGTGACTTGGCTGTTTTGTACATTCCTCATTTGCTATAAAATGTAATAGTCGGGTCTAgctgtagagacagtcactgcaTTGGAAAATTCTCCTAATAACGACACAGAATCCCTCAGATGCAGAGCATAAGTGTCCGGCAAGTGTGAAAGATGATTCTAGGATGGTTTCAGAAGTCTCCAATCCACACCAATAGTGGCTGAGGTTGACTGACTGGATCCATTTGTTTTTGTAGAAGTGTACAACAAAATGTATATAACGATTTACAAATGTCTGAACTCTTCCCTTTGATGACAATAGTTGTAACATGGAACTCTGTAACCtgcctatatgtgtgtgtgacagtttaATAAACACTTTCTTTTGTT
>XM_036987520.1
GTCCTTGGTAGCATCATGTACAAGATGAGCAAGAGAAAGTGTCTGCAGTGTAGAGGACCCGTCTCTCAGACAAGAGGTCCAGCAGTCTCCTCTTCAGATCCAGGGCCCAAGATGCAGACAGTTTCCATGACGTATTCTGAAACTGAGCAACAAGAAGAACAGATTGGAATGCTTCTCAGCAAAGCCAGTATGGGAATCGTTATGCCAACTCGTCAGACCAACAGTGACGATGATGCCCTGAACTATACTACCCTGATGTTCACTGAAATGAAGAGTACCAAGcccaggagacagaggagagaacagaggaagaaACCATCTACTCTGGTTGACTCATCAAGACAGGATGTGACATGTTGTGCACTTAACAAGGATGTAATCCAAACAGACCCTGTGATAGTTACACGCCTGGGACAAAGTGTAACTCTCACATGCTTTTGTCAACTTGATTTGCTGATCAGAGTCTCTTGGTTCAAGCAATCTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCTCTCTAAACATAGTTTGCATTTTACCAAGGACTTTAATGAGACTAAACGTTTAAGTGTGAAGAGAGGAGTTGACAGCTTTAACTTGACCATCTCAAAGACAGAGTCAGGGGACTCAGCTATATACTACTGTGGTGCTATGGAAGCGGGCCAAGTCACATTTGGAGAAGGAACATTTTTAATTGTCAAAGATTCAGGGTCCAACAGCATGTCTGTGCTTCAGCAGCCTTTGTCTGAGTCAGTTCAGCTAGGAGAATCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAGTACAGTGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCCTTAGAGACAAGAGTGATTGGTGTGAGAAAAGTCCAGAGGCTTGTCCTCCTGAGGCTGGGTCTCCTACACAGAGTTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGAAGTTTCAGACCTGTTGGGTGATAAGAGTAATCTTGTTTTCTTCGTATTTATATCTGGCCTGACAACTGCTGTGATTCTGAGTGTGATTGTCAACATTATCCTCTGTGTGATAATGAAGAGGTCACGATGTGAACACTGTGCAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCCAACACCTCAGACCAACAGCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTATTCTGGTGTGAGTTATCAAGTCAGGATGTGACAGTCATCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCACTTTGAGCttgactgtgtctgtgtgacttTGCTGTTTTGTACATTCCTCATTTGCTATAAAATGTAATAGTCGGGTCTAgctgtagagacagtcactgcaTTGGCATATTCTCATAATAATGACATAGAATCGCTCAGATGCAGAGCATAAGTGTCCAGCAAGTGTGAAAGCTGATACTAGGATGGTTTCATAAGTCTCAAAAACTCACCAACAGTGGCTGAGGTTGACTGACTGGATACATTTGTTTTTGTAGAAGTGTACAACAAAATGTATATAA
>XM_036987521.1
tGATTGTTGGTGTCTTAGTGGTTGTTGTAGGTGTTAGTTTGTATGTATTTTCCTATTTGGAATCTTGTTTGACTTTTGACCCGTCTCTCAGACAAGAGGTCCAGCAGTCTCCTCTTCAGATCCAGGGCCCAAGATGCAGACAGTTTCCATGACGTATTCTGAAACTGAGCAACAAGAAGAACAGATTGGAATGCTTCTCAGCAAAGCCAGTATGGGAATCGTTATGCCAACTCGTCAGACCAACAGTGACGATGATGCCCTGAACTATACTACCCTGATGTTCACTGAAATGAAGAGTACCAAGcccaggagacagaggagagaacagaggaagaaACCATCTACTCTGGTTGACTCATCAAGACAGGATGTGACATGTTGTGCACTTAACAAGGATGTAATCCAAACAGACCCTGTGATAGTTACACGCCTGGGACAAAGTGTAACTCTCACATGCTTTTGTCAACTTGATTTGCTGATCAGAGTCTCTTGGTTCAAGCAATCTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCTCTCTAAACATAGTTTGCATTTTACCAAGGACTTTAATGAGACTAAACGTTTAAGTGTGAAGAGAGGAGTTGACAGCTTTAACTTGACCATCTCAAAGACAGAGTCAGGGGACTCAGCTATATACTACTGTGGTGCTATGGAAGCGGGCCAAGTCACATTTGGAGAAGGAACATTTTTAATTGTCAAAGATTCAGGGTCCAACAGCATGTCTGTGCTTCAGCAGCCTTTGTCTGAGTCAGTTCAGCTAGGAGAATCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAGTACAGTGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCCTTAGAGACAAGAGTGATTGGTGTGAGAAAAGTCCAGAGGCTTGTCCTCCTGAGGCTGGGTCTCCTACACAGAGTTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGAAGTTTCAGACCTGTTGGGTGATAAGAGTAATCTTGTTTTCTTCGTATTTATATCTGGCCTGACAACTGCTGTGATTCTGAGTGTGATTGTCAACATTATCCTCTGTGTGATAATGAAGAGGTCACGATGTGAACACTGTGCAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCcaacaccacagaccaacagCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTACTCTGGTGTGAGTCATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCACTTTGAGCTTTACTGTGTCCGTGTGACTTGGCTGTTTTGTACATTCCTCATTTGCTATAAAATGTAATAGTCGGGTCTAgctgtagagacagtcactgcaTTGGAAAATTCTCCTAATAACGACACAGAATCCCTCAGATGCAGAGCATAAGTGTCCGGCAAGTGTGAAAGATGATTCTAGGATGGTTTCAGAAGTCTCCAATCCACACCAATAGTGGCTGAGGTTGACTGACTGGATCCATTTGTTTTTGTAGAAGTGTACAACAAAATGTATATAACGATTTACAAATGTCTGAACTCTTCCCTTTGATGACAATAGTTGTAACATGGAACTCTGTAACCtgcctatatgtgtgtgtgacagtttaATAAACACTTTCTTTTGTT
>XM_036987522.1
TGTTGGTGTCTTAGTGGTTGTTGACCCGTCTCTCAGACAAGAGGTCCAGCAGTCTCCTCTTCAGATCCAGGGCCCAAGATGCAGACAGTTTCCATGACGTATTCTGAAACTGAGCAACAAGAAGAACAGATTGGAATGCTTCTCAGCAAAGCCAGTATGGGAATCGTTATGCCAACTCGTCAGACCAACAGTGACGATGATGCCCTGAACTATACTACCCTGATGTTCACTGAAATGAAGAGTACCAAGcccaggagacagaggagagaacagaggaagaaACCATCTACTCTGGTTGACTCATCAAGACAGGATGTGACATGTTGTGCACTTAACAAGGATGTAATCCAAACAGACCCTGTGATAGTTACACGCCTGGGACAAAGTGTAACTCTCACATGCTTTTGTCAACTTGATTTGCTGATCAGAGTCTCTTGGTTCAAGCAATCTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATCTCTCTAAACATAGTTTGCATTTTACCAAGGACTTTAATGAGACTAAACGTTTAAGTGTGAAGAGAGGAGTTGACAGCTTTAACTTGACCATCTCAAAGACAGAGTCAGGGGACTCAGCTATATACTACTGTGGTGCTATGGAAGCGGGCCAAGTCACATTTGGAGAAGGAACATTTTTAATTGTCAAAGATTCAGGGTCCAACAGCATGTCTGTGCTTCAGCAGCCTTTGTCTGAGTCAGTTCAGCTAGGAGAATCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAGTACAGTGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCCTTAGAGACAAGAGTGATTGGTGTGAGAAAAGTCCAGAGGCTTGTCCTCCTGAGGCTGGGTCTCCTACACAGAGTTGTGTCTACAACCTCCCCAAGAGGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggcctcatGTGGGGAGATACTGTTTGGGAACGGGACCAAGCTGGATGTTGAAGTTTCAGACCTGTTGGGTGATAAGAGTAATCTTGTTTTCTTCGTATTTATATCTGGCCTGACAACTGCTGTGATTCTGAGTGTGATTGTCAACATTATCCTCTGTGTGATAATGAAGAGGTCACGATGTGAACACTGTGCAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCcaacaccacagaccaacagCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTACTCTGGTGTGAGTCATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCACTTTGAGCTTTACTGTGTCCGTGTGACTTGGCTGTTTTGTACATTCCTCATTTGCTATAAAATGTAATAGTCGGGTCTAgctgtagagacagtcactgcaTTGGAAAATTCTCCTAATAACGACACAGAATCCCTCAGATGCAGAGCATAAGTGTCCGGCAAGTGTGAAAGATGATTCTAGGATGGTTTCAGAAGTCTCCAATCCACACCAATAGTGGCTGAGGTTGACTGACTGGATCCATTTGTTTTTGTAGAAGTGTACAACAAAATGTATATAACGATTTACAAATGTCTGAACTCTTCCCTTTGATGACAATAGTTGTAACATGGAACTCTGTAACCtgcctatatgtgtgtgtgacagtttaATAAACACTTTCTTTTGTT
>TU886378
GTAAACAAGAAAAGGTTTAGAATATATTGAATGTTTTGACATTTGTCTTTTAGCGGGGAGCCCTTTTCAGCAAAGCCACTATGGGAATCCTCATTCcaacaccacagaccaacagCTCCACGGTGACGATGATGGCCTGAACTATGCTGGCCTAAAGTTCACTGACAAGAAGcccaggagacagaggagagaacagagagaggaagaaaccatCTACTCTGGTGTGAGTCATCAAGTCAGGATGTGACAGTCCTCCAATCAGCATCATTTTAAGTTGAGCCCTACTGACCTCCACTTTGAGCTTTACTGTGTCCGTGTGACTTGGCTGTTTTGTACATTCCTCATTTGCTATAAAATGTAATAGTCGGGTCTAgctgtagagacagtcactgcaTTGGAAAATTCTCCTAATAACGACACAGAATCCCTCAGATGCAGAGCATAAGTGTCCGGCAAGTGTGAAAGATGATTCTAGGATGGTTTCAGAAGTCTCCAATCCACACCAATAGTGGCTGAGGTTGACTGACTGGATCCATTTGTTTTTGTAGAAGTGTACAACAAAATGTATATAACGATTTACAAATGTCTGAACTCTTCCCTTTGATGACAATAGTTGTAACATGGAACTCTGTAACCtgcctatatgtgtgtgtga

Function

NR:

description
uncharacterized protein LOC109906469

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053201.1 False 1331 mRNA 0.47 10 19395967 19399905
XM_036987519.1 False 1847 mRNA 0.45 10 19395967 19400305
XM_036987520.1 False 1738 mRNA 0.45 10 19395967 19443151
XM_036987521.1 False 1869 mRNA 0.44 10 19396226 19400305
XM_036987522.1 False 1814 mRNA 0.45 10 19396230 19400305
TU886378 True 655 lncRNA 0.43 2 19399513 19400279

Neighbor

gene id symbol gene type direction distance location
LOC110532960 LOC106577747 coding upstream 25040 19364680 ~ 19370927 (+)
LOC110532958 LOC106577717 coding upstream 52128 19340727 ~ 19343839 (+)
LOC110531678 LOC106577718 coding upstream 57405 19336641 ~ 19338562 (+)
LOC118966013 NA coding upstream 201235 19193597 ~ 19194732 (+)
LOC118966168 LOC106577681 coding upstream 251104 19131879 ~ 19144863 (+)
LOC110531684 LOC106577681 coding downstream 12561 19455712 ~ 19457543 (+)
LOC110532963 LOC106577673 coding downstream 30293 19473444 ~ 19477681 (+)
LOC110531681 LOC106577677 coding downstream 60814 19503965 ~ 19506500 (+)
LOC110531687 LOC106577672 coding downstream 126103 19569254 ~ 19571207 (+)
LOC110532966 dock11 coding downstream 172984 19616135 ~ 19704178 (+)
G777913 NA non-coding upstream 46095 19344620 ~ 19349872 (+)
G777889 NA non-coding upstream 86537 19309195 ~ 19309430 (+)
G777865 NA non-coding upstream 119160 19276224 ~ 19276807 (+)
G777707 NA non-coding upstream 319200 19076112 ~ 19076767 (+)
LOC110532947 LOC106577684 non-coding upstream 321409 19070843 ~ 19074558 (+)
G778967 NA non-coding downstream 101920 19545071 ~ 19555880 (+)
G779052 NA non-coding downstream 152037 19595188 ~ 19595413 (+)
G779083 NA non-coding downstream 193157 19636308 ~ 19706947 (+)
G779137 NA non-coding downstream 320777 19763928 ~ 19764140 (+)
G779138 NA non-coding downstream 322056 19765207 ~ 19765716 (+)
LOC110531664 LOC106577696 other upstream 738393 18656177 ~ 18673318 (+)
G777396 NA other upstream 895949 18499614 ~ 18500018 (+)
G777165 NA other upstream 1287485 18108019 ~ 18108482 (+)
G777113 NA other upstream 1390299 18003267 ~ 18005668 (+)
G777111 NA other upstream 1393785 18001889 ~ 18002182 (+)
LOC110531694 LOC106577663 other downstream 374537 19817663 ~ 19824606 (+)
LOC110531697 NA other downstream 433117 19876221 ~ 19914138 (+)
LOC110531703 LOC106577651 other downstream 566365 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 596460 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 636285 20079382 ~ 20082084 (+)

Expression


Co-expression Network