LOC110531692 (LOC106577665)


Basic Information

Item Value
gene id LOC110531692
gene name LOC106577665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19771166 ~ 19806842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987525.1
agagagagagagagagagaggaatgcgtCGCTAATGAGTAAACGGACCATCGCCCGAGCACGAAAGAGCGGACAACGGAAAGGGGGAAAGGAGGAAAAACGGAGAAATGTTGTAAACCGCAACAAAAAAAAGCAGTAAGGGGAGGTGGAGAACGAAGAAAACCGTCATATATTAATTGGAAGGATTACAATTACCCTATACTGGTGAATAGAATCCAACTAGGATTTTTAATGCTGCCCTCACGGAGAATTGAGCTAACGGACTTACTGGTCTTCTGAACCATGCAGCGGCTTTTGCTCCTGAGTTTGGCGTTGAGTTTTCACCGTGTGTGGACAGCGCGTTTCTCCCAGGAGCCAGCGGACCAGTCGGTGGTGCTGGGCCAGAGGGTGATTCTGTCGTGTGTTGTGTTTAACTACTCGGGCATTGTGCAGTGGACCAAGGATGGACTGGCCCTGGGCATCGGAGAGGACCTCAGGGCCTGGCCGAGGTACCGTGTGTTGCGGGTGCAGGAGCTGGGCCAGTATAACCTGGAGATCATCTCATCTGAACTGTCTGATGACTCCCTGTACGAGTGTCAGGCCCCAGACGCTGCGCTACGTTCGAGAAGAGCCAAACTCACCGTCCTCATCCCCCCAGATGACCCAGTGATAGACGGGGCCCCTGAGGTGCTGCTGAATGCAGGGGACCACTATAACCTGAGCTGTGTGTCCCGCGGGGCCAAGCCCCCTGCCATGATAGAGTGGCAGAAAGATGGGATCCCTGTAGATGGAGCAGTCAGCACCACCgAGGTGCTCCCGGACAGGAAGAGGGTGACGACCCACAGCTTCCTGCCCATCCACCCAGTGGACACAGACACAGGGAGGAACTACAGCTGTGTGGCCAGTAACCTGGCTATCCCCGCCGGGAAACGCACCACCGTCACCCTCAACGTACACCACCCCCCTACGGTGACACTGTCCATCGAGCCTCGCTCCGTCTTAGAGGGGGACAGAGTTACCTTCACCTGCGCCGCCTCCGCCAACCCTCCTATCATGGGATACATGTGGGCTAAAGGTGGAGTGATCCTGCAGGGGGCCAGAGAGAGTGTGTTCACCACCAAAGCTGACCATTCCTTCTTCACTGAGCCAGTGTCCTGCTCAGTGTTCAACGCCGTGGGCAAAACCAACGTCAGCATCCTGGTCGATGTACACTtTGGTCCTATTCTGGTAGTGGAGCCCAGGCCAGTGACAGTGGACATAGACTCTGATGTCACTCTGAACTGCAAATGGGCCGGCAACCCTCCTCTAACACTTACCTGGACCAAGAAGGGCTCCAATATGGTCCTTAGTAATAACAACCAGCTGTTCCTGAAGTCAGTGAGCCAGGCGGACGCTGGGCAGTACGTGTGTAAGGCCATCGTCCCCAGGATcggagtgggagagacagaggtcaCGCTCACTGTCAACGGTCCCCCCATCATCTCCAGTGAGCCCGTCCAGTATgcggtgaggggggagagaggagaggtcaaATGCTACATCGCCAGCACACCTCCACCGGACAAGATTgtGTGGGCGTGGAAAGAGAACGtgtgggagaaggagaaggggactCTGTTGGAGAGGTACACGGTGGAGCAGAGTAAACCTCTGTCTGAGGGAGGGGCTGTCCTCTCCACCCTCACCATCAACAACGTCATGGAGGCTGACTTCCTGTCCACCTACAACTGTACTGCCTGGAACGCCTTCGGACCCGGGACCATGATCATCACCCTGGAGGAGACTGaGGAGGTCCCAGTGGGTATAATAGCAGGAGGGACTGTTGGCTGCACCATCCTGCTGTTCCTGTGTTTACTAGTCCTGGTGCTCATCTTCTACCGGCAGCACAAAGGCAGTCGTCGCGGGGTCACGCTGGGTAAGCCAGACATCAAGGTAGAGACAATAAACAAGGAGACCCACAGTCTGGAGGAGGACTCCGGCAGTGTTTCCACGGCATCACGCATGGTCAAGGCCATGTACTCGTTTCTGCCCTCTTCTgtgcccttctctccctcctctcagcccTTTAAAGACGATATAGAACTGAAACAGGACCTACGCAGCGACACTCTAGACACACGCCAGGAGTACGACCTTAAGgatcCCACCAACGGCTACTACAACGTGCGAGCCTCCACCCACGACGAGGGCCGTCCCGCCTCCCGCTCCATGCACTACTCCGACTACCGGCCCTCCAACACCCCAGGGGGCGCTGCCTCCATAAGCAGCAGTGTTGGAGGATCAGGGGCCACGGCCAGCGGAGGAGGCCCTCCAGGCCCAGGGCCCCTCAACACCCCTGGCCGCCCCAGCTGCTACGACCCCCGTCCCCCCTCCAGACTGTCCCATAACAGCTATGCTCAGTTTAACACATTCACCCGGGCTGGGCAGAGCCAGCCGCCCCCTCCCAACCCCCCGCCGCAGACCAGCGACTTCCCTGGGGACTGCAGCCTGTTGGACTCCTCTCAACTGGCATACGACAACTACGGCTATCCCTCTCACCCCTATACCCCCTACCGCATGGGATTCGCCCCGCCCACTCTGGCTCCCTTGGAAGTCGGTCCGTCGTATGAGATGTACGGGGTGGGGCCGGGGGTGGGCCCTGTGCCAGGGGTGGGGCCTGGTGTGGGGGTGGGGCCTGGGGCAGCTCCGTCAGGGTCAGAGACTGGACTGGGGAAGTATGGAAGCTCGACCCGCTTCTCCTATACCTCGCAGCATTCTGACTACGGCCACAGAGGGCACACACAGAGGATGCAGACACATGTGTGAGATACAGTTCATTCTCACGTAGAGGGTGAGGGTGCATTCTCatacacactgtcactcagacgcacacacacattcacattctcaaacatacacacacaaacacacttgagcgtacacagacacacacacactgagacacacatgcagacagacacacacacacacacacacacacatacacacacacacacacacacacacacacaggagtttGCCCACGAGACAGGGAGGgtatgagaaagagagatagtCCAGATCAGTGGAAAATAGAGAGTATCCCAATGAGACAGAGGGGATTTCCTTGTAATCAGAATTCCAACACTCCCAGTGTTCAATTCTTCGCTCTGAAAGAGCAGAAAGCGAAAGTCACAATCAAGACCAGAGAAAATAGGACTAGAGAGAACAAGAGATCTTTAGATCTTAATTGTCAAAATGAATAGCAGAAGTGCTATGAATTTAGACTGTAATGAGTgacgagaggggggggggggggggggtgttacagGCAATTTATTCCATATACGATTGCCAAATATTAAAGTAAGGCATATCATGGAGAAATTGACCATCAAATATGGTACCTTCGCTCGTTCGTTGGGCGGGAGAAACCTCAACCAATGAGGAGTAATGACTGTCTGCCATTTTGTTTTAGCTGGTTGTTGTTTTATACAGTGATCTTAGAGCACATATATATCCCAGAATGCTTTACTTCATTGGCGCCATTGGTGCTGGTTAGTGGGGCCATGGTACGTTTTGCACTGCATTACAAACAGTATTCATTGCTTAGACATCCGTTATCTATATCTATAGCTGTATTATATATGTCTGTTTTTATTTGCACACCAACAAACTAGAGCTTTGTATtctattttttaacattttactGAATTATTTTTGTCATATTTCTGTGAAGGAGGTGTCTGTGGACCAAAATGTTCTAACTTGAGAGGGTTTAGTATTTGTTTGGGTGATATTCACCCCAACAAACAAAGAGAAACATGAAGAAGTATTTGTTGACCTGTTTCTGTCAGCCAATGATGACTGGCAGAATTCAGGAAGGGGGAGTATATACAGGAACCTTTTTACCAAGTGTCCATGTTGCTCTTTATTTTGATGTAAATCTTGGGTTACAAGCATTTATGCAGTAGATAGCATGCAGGAGGTCCTTATATTGGCAGGTGTTGTGTGTTGCTAGGCCTACCAAGGGTTTAGGTATTGAGGCAGTTCCGGGCATATGGAACTATAAGCCTGGTAGCCTGGGATCCAAACTGAAATCGCTTTGTTACACCATTTATATGAATATACTACATCATTGATATGATGAAACATAGCAAATTCAGCTTGGATCCAGGCTATAAGCCTTAGCCTGGTGCCCCCTGCTGAAATAGAAAGAGGTGAtgtggtagcctggtcccaggtctatttgtgctgtcttgcctaCTCCTGTGGTCATTGTCACACTTGCGAACAAACAGAGCTGGGACCATGGCTAGTGAGATGGTGTGTACAGAGGTTTAGAAGAGAGTGGCCTTAGGGAACATGTGGTAAACACTTTCATTACTCATACACAATCAGCCATGATGACGAGGCCTGAGGAGAATGTGTATAGAAAGGGGCAATGAAGGTTTTTCTACAGTATTGACATATAgtggtgtgtgattgtgtgaatGTGTATGGGTGAAAGAAAGAATGAGcaaaagggagatagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgcacatctaTTTGTACAGTGTTTGTATAGATGTGtgaatggctgtgtgtgtatgtaacacATAGACATACCGTACTctacctgcgtgtgtgtgtgtgaatattgtatgcgtgtgtgtatgtctgtatgtgtttatgtgtgtgagtgttttagTAAtacagcatttcccaaactcggtcctggggcggATGTTTGGGTTTTCTGCCCTAGtactacacaactgattcaaataaacaagtcatcatcaagctttgattatttgaatcagctgtgtagtgttaggtgcaaaaaccaaaacatgccccctttggggtcccgaggaccgagtttggaaaaCGCTGCATTAATCTGTCCATATCATTTCTCTTCGCAATCCTGTTCCAATACTTGTATACCTCTGGTAGGACTGTATCCTGTATTATTGTGTCTTTGAATTTAGAAATACAATGTTTATCTTATTGTACTGTTCAACGTAGCAGAGAAAAACTGTTCAAAAGATGTACAACAAAAATCACATTTTCATTTTTTAAGTTCATTATCTccaatattttttaaaaatggtaTGTAATTATTTTTCCACAGTATTACAGAAATAAAAAGCACTGTTTTTTATAAAATTAA
>XM_036987526.1
agagagagagagagagaggaatgcgtCGCTAATGAGTAAACGGACCATCGCCCGAGCACGAAAGAGCGGACAACGGAAAGGGGGAAAGGAGGAAAAACGGAGAAATGTTGTAAACCGCAACAAAAAAAAGCAGTAAGGGGAGGTGGAGAACGAAGAAAACCGTCATATATTAATTGGAAGGATTACAATTACCCTATACTGGTGAATAGAATCCAACTAGGATTTTTAATGCTGCCCTCACGGAGAATTGAGCTAACGGACTTACTGGTCTTCTGAACCATGCAGCGGCTTTTGCTCCTGAGTTTGGCGTTGAGTTTTCACCGTGTGTGGACAGCGCGTTTCTCCCAGGAGCCAGCGGACCAGTCGGTGGTGCTGGGCCAGAGGGTGATTCTGTCGTGTGTTGTGTTTAACTACTCGGGCATTGTGCAGTGGACCAAGGATGGACTGGCCCTGGGCATCGGAGAGGACCTCAGGGCCTGGCCGAGGTACCGTGTGTTGCGGGTGCAGGAGCTGGGCCAGTATAACCTGGAGATCATCTCATCTGAACTGTCTGATGACTCCCTGTACGAGTGTCAGGCCCCAGACGCTGCGCTACGTTCGAGAAGAGCCAAACTCACCGTCCTCATCCCCCCAGATGACCCAGTGATAGACGGGGCCCCTGAGGTGCTGCTGAATGCAGGGGACCACTATAACCTGAGCTGTGTGTCCCGCGGGGCCAAGCCCCCTGCCATGATAGAGTGGCAGAAAGATGGGATCCCTGTAGATGGAGCAGTCAGCACCACCgAGGTGCTCCCGGACAGGAAGAGGGTGACGACCCACAGCTTCCTGCCCATCCACCCAGTGGACACAGACACAGGGAGGAACTACAGCTGTGTGGCCAGTAACCTGGCTATCCCCGCCGGGAAACGCACCACCGTCACCCTCAACGTACACCACCCCCCTACGGTGACACTGTCCATCGAGCCTCGCTCCGTCTTAGAGGGGGACAGAGTTACCTTCACCTGCGCCGCCTCCGCCAACCCTCCTATCATGGGATACATGTGGGCTAAAGGTGGAGTGATCCTGCAGGGGGCCAGAGAGAGTGTGTTCACCACCAAAGCTGACCATTCCTTCTTCACTGAGCCAGTGTCCTGCTCAGTGTTCAACGCCGTGGGCAAAACCAACGTCAGCATCCTGGTCGATGTACACTtTGGTCCTATTCTGGTAGTGGAGCCCAGGCCAGTGACAGTGGACATAGACTCTGATGTCACTCTGAACTGCAAATGGGCCGGCAACCCTCCTCTAACACTTACCTGGACCAAGAAGGGCTCCAATATGGTCCTTAGTAATAACAACCAGCTGTTCCTGAAGTCAGTGAGCCAGGCGGACGCTGGGCAGTACGTGTGTAAGGCCATCGTCCCCAGGATcggagtgggagagacagaggtcaCGCTCACTGTCAACGGTCCCCCCATCATCTCCAGTGAGCCCGTCCAGTATgcggtgaggggggagagaggagaggtcaaATGCTACATCGCCAGCACACCTCCACCGGACAAGATTgtGTGGGCGTGGAAAGAGAACGtgtgggagaaggagaaggggactCTGTTGGAGAGGTACACGGTGGAGCAGAGTAAACCTCTGTCTGAGGGAGGGGCTGTCCTCTCCACCCTCACCATCAACAACGTCATGGAGGCTGACTTCCTGTCCACCTACAACTGTACTGCCTGGAACGCCTTCGGACCCGGGACCATGATCATCACCCTGGAGGAGACTGaGGAGGTCCCAGTGGGTATAATAGCAGGAGGGACTGTTGGCTGCACCATCCTGCTGTTCCTGTGTTTACTAGTCCTGGTGCTCATCTTCTACCGGCAGCACAAAGGCAGTCGTCGCGGGGTCACGCTGGGTAAGCCAGACATCAAGGTAGAGACAATAAACAAGGAGACCCACAGTCTGGAGGAGGACTCCGGCAGTGTTTCCACGGCATCACGCATGGTCAAGGCCATGTACTCGcccTTTAAAGACGATATAGAACTGAAACAGGACCTACGCAGCGACACTCTAGACACACGCCAGGAGTACGACCTTAAGgatcCCACCAACGGCTACTACAACGTGCGAGCCTCCACCCACGACGAGGGCCGTCCCGCCTCCCGCTCCATGCACTACTCCGACTACCGGCCCTCCAACACCCCAGGGGGCGCTGCCTCCATAAGCAGCAGTGTTGGAGGATCAGGGGCCACGGCCAGCGGAGGAGGCCCTCCAGGCCCAGGGCCCCTCAACACCCCTGGCCGCCCCAGCTGCTACGACCCCCGTCCCCCCTCCAGACTGTCCCATAACAGCTATGCTCAGTTTAACACATTCACCCGGGCTGGGCAGAGCCAGCCGCCCCCTCCCAACCCCCCGCCGCAGACCAGCGACTTCCCTGGGGACTGCAGCCTGTTGGACTCCTCTCAACTGGCATACGACAACTACGGCTATCCCTCTCACCCCTATACCCCCTACCGCATGGGATTCGCCCCGCCCACTCTGGCTCCCTTGGAAGTCGGTCCGTCGTATGAGATGTACGGGGTGGGGCCGGGGGTGGGCCCTGTGCCAGGGGTGGGGCCTGGTGTGGGGGTGGGGCCTGGGGCAGCTCCGTCAGGGTCAGAGACTGGACTGGGGAAGTATGGAAGCTCGACCCGCTTCTCCTATACCTCGCAGCATTCTGACTACGGCCACAGAGGGCACACACAGAGGATGCAGACACATGTGTGAGATACAGTTCATTCTCACGTAGAGGGTGAGGGTGCATTCTCatacacactgtcactcagacgcacacacacattcacattctcaaacatacacacacaaacacacttgagcgtacacagacacacacacactgagacacacatgcagacagacacacacacacacacacacacacatacacacacacacacacacacacacacacaggagtttGCCCACGAGACAGGGAGGgtatgagaaagagagatagtCCAGATCAGTGGAAAATAGAGAGTATCCCAATGAGACAGAGGGGATTTCCTTGTAATCAGAATTCCAACACTCCCAGTGTTCAATTCTTCGCTCTGAAAGAGCAGAAAGCGAAAGTCACAATCAAGACCAGAGAAAATAGGACTAGAGAGAACAAGAGATCTTTAGATCTTAATTGTCAAAATGAATAGCAGAAGTGCTATGAATTTAGACTGTAATGAGTgacgagaggggggggggggggggggtgttacagGCAATTTATTCCATATACGATTGCCAAATATTAAAGTAAGGCATATCATGGAGAAATTGACCATCAAATATGGTACCTTCGCTCGTTCGTTGGGCGGGAGAAACCTCAACCAATGAGGAGTAATGACTGTCTGCCATTTTGTTTTAGCTGGTTGTTGTTTTATACAGTGATCTTAGAGCACATATATATCCCAGAATGCTTTACTTCATTGGCGCCATTGGTGCTGGTTAGTGGGGCCATGGTACGTTTTGCACTGCATTACAAACAGTATTCATTGCTTAGACATCCGTTATCTATATCTATAGCTGTATTATATATGTCTGTTTTTATTTGCACACCAACAAACTAGAGCTTTGTATtctattttttaacattttactGAATTATTTTTGTCATATTTCTGTGAAGGAGGTGTCTGTGGACCAAAATGTTCTAACTTGAGAGGGTTTAGTATTTGTTTGGGTGATATTCACCCCAACAAACAAAGAGAAACATGAAGAAGTATTTGTTGACCTGTTTCTGTCAGCCAATGATGACTGGCAGAATTCAGGAAGGGGGAGTATATACAGGAACCTTTTTACCAAGTGTCCATGTTGCTCTTTATTTTGATGTAAATCTTGGGTTACAAGCATTTATGCAGTAGATAGCATGCAGGAGGTCCTTATATTGGCAGGTGTTGTGTGTTGCTAGGCCTACCAAGGGTTTAGGTATTGAGGCAGTTCCGGGCATATGGAACTATAAGCCTGGTAGCCTGGGATCCAAACTGAAATCGCTTTGTTACACCATTTATATGAATATACTACATCATTGATATGATGAAACATAGCAAATTCAGCTTGGATCCAGGCTATAAGCCTTAGCCTGGTGCCCCCTGCTGAAATAGAAAGAGGTGAtgtggtagcctggtcccaggtctatttgtgctgtcttgcctaCTCCTGTGGTCATTGTCACACTTGCGAACAAACAGAGCTGGGACCATGGCTAGTGAGATGGTGTGTACAGAGGTTTAGAAGAGAGTGGCCTTAGGGAACATGTGGTAAACACTTTCATTACTCATACACAATCAGCCATGATGACGAGGCCTGAGGAGAATGTGTATAGAAAGGGGCAATGAAGGTTTTTCTACAGTATTGACATATAgtggtgtgtgattgtgtgaatGTGTATGGGTGAAAGAAAGAATGAGcaaaagggagatagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgcacatctaTTTGTACAGTGTTTGTATAGATGTGtgaatggctgtgtgtgtatgtaacacATAGACATACCGTACTctacctgcgtgtgtgtgtgtgaatattgtatgcgtgtgtgtatgtctgtatgtgtttatgtgtgtgagtgttttagTAAtacagcatttcccaaactcggtcctggggcggATGTTTGGGTTTTCTGCCCTAGtactacacaactgattcaaataaacaagtcatcatcaagctttgattatttgaatcagctgtgtagtgttaggtgcaaaaaccaaaacatgccccctttggggtcccgaggaccgagtttggaaaaCGCTGCATTAATCTGTCCATATCATTTCTCTTCGCAATCCTGTTCCAATACTTGTATACCTCTGGTAGGACTGTATCCTGTATTATTGTGTCTTTGAATTTAGAAATACAATGTTTATCTTATTGTACTGTTCAACGTAGCAGAGAAAAACTGTTCAAAAGATGTACAACAAAAATCACATTTTCATTTTTTAAGTTCATTATCTccaatattttttaaaaatggtaTGTAATTATTTTTCCACAGTATTACAGAAATAAAAAGCACTGTTTTTTATAAAATTAA

Function

NR:

description
kin of IRRE-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987525.1 False 5144 mRNA 0.50 15 19771166 19806842
XM_036987526.1 True 5103 mRNA 0.50 15 19771168 19806842

Neighbor

gene id symbol gene type direction distance location
trnar-ucu-3 NA coding upstream 1299 19769794 ~ 19769867 (+)
il13ra1a il13ra1a coding upstream 15174 19748164 ~ 19755992 (+)
il13ra1b il13ra1b coding upstream 47625 19706045 ~ 19723541 (+)
LOC110532966 dock11 coding upstream 66988 19616135 ~ 19704178 (+)
LOC110531687 LOC106577672 coding upstream 199959 19569254 ~ 19571207 (+)
LOC110532967 ndufs2 coding downstream 875 19807717 ~ 19817403 (+)
LOC110531694 LOC106577663 coding downstream 10821 19817663 ~ 19824606 (+)
LOC110531693 LOC106577661 coding downstream 18870 19825712 ~ 19853720 (+)
LOC110531697 NA coding downstream 69379 19876221 ~ 19914138 (+)
LOC110531699 LOC106577657 coding downstream 113481 19920323 ~ 19939202 (+)
G779138 NA non-coding upstream 5450 19765207 ~ 19765716 (+)
G779137 NA non-coding upstream 7026 19763928 ~ 19764140 (+)
G779083 NA non-coding upstream 64219 19636308 ~ 19706947 (+)
G779052 NA non-coding upstream 175753 19595188 ~ 19595413 (+)
G778967 NA non-coding upstream 215286 19545071 ~ 19555880 (+)
G779183 LOC106577660 non-coding downstream 55832 19862674 ~ 19870992 (+)
G779184 LOC106577660 non-coding downstream 58072 19864914 ~ 19872043 (+)
G779189 NA non-coding downstream 67645 19874487 ~ 19874811 (+)
G779212 NA non-coding downstream 109549 19916391 ~ 19918384 (+)
LOC110531664 LOC106577696 other upstream 1113592 18656177 ~ 18673318 (+)
G777396 NA other upstream 1271148 18499614 ~ 18500018 (+)
G777165 NA other upstream 1662684 18108019 ~ 18108482 (+)
G777113 NA other upstream 1765498 18003267 ~ 18005668 (+)
G777111 NA other upstream 1768984 18001889 ~ 18002182 (+)
LOC110531703 LOC106577651 other downstream 202674 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 232769 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 272594 20079382 ~ 20082084 (+)

Expression


Co-expression Network