LOC110532967 (ndufs2)


Basic Information

Item Value
gene id LOC110532967
gene name ndufs2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19807717 ~ 19817403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532967
attgttttatttttggtGGATTAAGTTTTTTCTATAAAGTATGggttttatttgtacttttttaaCTCTGTCCaattggtggcggtaatgcaccttttGGGGTTGTAGTCGGCTTTACATTCCACAGAGGATGACCGCCATGATGGCGGGGACAGTAATTGAGGTCGCTTAGCAAACTTGGACGTCCTTcaacaaaatgtattttaaatagtAATATGGTCAGCCCTGGTTGCACTGTCCTGCAATAATAATTTAACTTGTTAATGATATCCAAATAAGTCGTTCAGggatacaaaaaaaaatactgtCACATAACCGCTACTTTAGCTAACGCTAGTATTAGCAAGCTAGAATATGAGTCCATAGGGCTTACCTGCTCACCATATAACAGCGTTTTGTTTTTTCGGTCAGACTTAACAGCCCACCCTACATCTAGATCTAAGTTTCTTATGTTATGTCAAACGTGACTGTTGTATAGTTGCTGTAACGTTAAACAGCTTGAAAGTTTGGCTGTGTGTTACTGTAGTTATCTAGCCAACCGGTTATCTACTTGAGCTTCCTTCACCGTGGAGTTCAAGTCCGCTATTTAGCCGAAGTGGATGTTGAGTTAATAGCAGCACATTCGTGACCGGCTTGTCATCTTGCTAGTGAACTAATTAGCTAGCATAATACCTAACAATTTGTTAATGTGCTGAAGCAAATGAAATGCATTATTTTCACTGTCGTCTGAAAAACATTGCACAAGGATTGGAATGTTGGCACCAAACCGGTCTGAACTCCAGGCTAGCTAGCTGTCCACCTTGACTTGttctagttagctaacgttactcaACAACAACacgtttagctaacgttagctacttagGTGAAGTTATGTGAAGTTGCATGTACATCATTGAGGTCAACAACACTTCAGAGTCAAACATCAATACGTGTAAGACAGTAACTTGAAACAGTTCAGGCTTTTCAAGGGGGGAGAGCCAGCAGGGAGTATGTTTCATACGTTTGTGCCTTGACAATTAGGCTATGGACCCTGCCTACCCCTGCTGTGTGAAATGTGATTAGTGACCTGTCTGTTTTGGCTGACCTAGAGCGTAATAATGCCCAACCCTGACCTCTGTCATCATTACGAGGTGTTTCCTTGGCACTTGTGGTTGCTCAAGACTGAGTTGGCTTACCTCAAGAGCCTTTGTAGACAAAAACAATGGCAGCCAGATGTGGAGTGGACGGAGCAGTATGCCGGGGCGGTGATGTATCCCAGCGCCATCACTGAGAAATGGGTCCCCCCACCATGGAATGATAAAGATGCTCCTATGGAGAAGGTGTCTAACCACACCATTAACTTTGGGCCCCAGCACCCCGCTGCCCACGGCGTGCTGCGTCTGGTGCTTGACATCAGCGGGGAGTCGGTGAAGAAGTGTGATCCCCATGTGGGCCTGCGGCACAGAGAAACTCATCGAGTACAAGACCTACCTGCAGTATGCGCTGCCCTACTTTGACAGGCTGGACTACGTATCCATGATGTGTAACGAGCAGGCCTACTCTCTGGCCGTGGAGAAGCTGCTCAACATCCAGGCCCCACCCCGTGCACAGTGGATCAGAGTTCTTTTCGGAGAGCTGACTCGTATCATGAACCACATCATGGCCATCACCACGCGCGCCCTGGACATCGGAGCCATGACCCCTTTCTTCTGGATGTTTGAGGAGAGGGAAAAGATGTTTGAGTTCTATgagcgtgtctcaggggccaggatgCATGCAGCCTACGTCAGACCTGGAGGAGTACACCAGGACATGCCACTGGGGCTAATGGATGACATCTACGAATGGTGCAAGAACTTTTCCATCAGAATAGACGAGGTGGAGGAGATGTTGACCAACAACCGTATCTGGAAGAACCAAACTGTGGACTTTGGGGTTGTCTGCTGAGGATGCACTCAACTATGGCTTTAGCTGAGgcaaatatatatatgtTGGTGTGATGCTGAGGGGTTCAGGCATCAAGTGGGACCTGAGGAAGTCTCAGCCCTATGACAAGTATGACGAGGTGGAGTTTGACATCCCCATTGGCAACAAGGGAGACTGCTATGACAGGTACCTGTGCAGGGTGGAGGAGATGAGGCAGAGTCTCAGGATTGTGATCGAGGCCCTCAACAAGATGCCAGCAGGAGTTCAAAGTGGATGACGCCAAGGTGGCCCCGCCCAAGAGATCTGAGATGAAGATGTCCATGGAGTCTCTGATCCatcactttaagctgtacacagAGGGTTACCAGTTGCCCCCGGATCTACATATACGGCAGTAGAAGCACCCAAGGCTGCCCTGGATATGATGGCTAAAGGACACATGCTGGCTGATGTGGTGGCCCTTATTGATGAAGGCTCTGTCCGTATCCTCACATAG

Function

symbol description
ndufs2 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in Leigh disease; hypertrophic cardiomyopathy; inherited metabolic disorder; multiple sclerosis; and nuclear type mitochondrial complex I deficiency 6. Orthologous to human NDUFS2 (NADH:ubiquinone oxidoreductase core subunit S2).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0048038 quinone binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532967 True 2404 mRNA 0.47 12 19807717 19817403

Neighbor

gene id symbol gene type direction distance location
LOC110531692 LOC106577665 coding upstream 875 19771166 ~ 19806842 (+)
trnar-ucu-3 NA coding upstream 37850 19769794 ~ 19769867 (+)
il13ra1a il13ra1a coding upstream 51725 19748164 ~ 19755992 (+)
il13ra1b il13ra1b coding upstream 84176 19706045 ~ 19723541 (+)
LOC110532966 dock11 coding upstream 103539 19616135 ~ 19704178 (+)
LOC110531694 LOC106577663 coding downstream 260 19817663 ~ 19824606 (+)
LOC110531693 LOC106577661 coding downstream 8309 19825712 ~ 19853720 (+)
LOC110531697 NA coding downstream 58818 19876221 ~ 19914138 (+)
LOC110531699 LOC106577657 coding downstream 102920 19920323 ~ 19939202 (+)
LOC110533004 NA coding downstream 125272 19942675 ~ 19946522 (+)
G779138 NA non-coding upstream 42001 19765207 ~ 19765716 (+)
G779137 NA non-coding upstream 43577 19763928 ~ 19764140 (+)
G779083 NA non-coding upstream 100770 19636308 ~ 19706947 (+)
G779052 NA non-coding upstream 212304 19595188 ~ 19595413 (+)
G778967 NA non-coding upstream 251837 19545071 ~ 19555880 (+)
G779183 LOC106577660 non-coding downstream 45271 19862674 ~ 19870992 (+)
G779184 LOC106577660 non-coding downstream 47511 19864914 ~ 19872043 (+)
G779189 NA non-coding downstream 57084 19874487 ~ 19874811 (+)
G779212 NA non-coding downstream 98988 19916391 ~ 19918384 (+)
LOC110531664 LOC106577696 other upstream 1150143 18656177 ~ 18673318 (+)
G777396 NA other upstream 1307699 18499614 ~ 18500018 (+)
G777165 NA other upstream 1699235 18108019 ~ 18108482 (+)
G777113 NA other upstream 1802049 18003267 ~ 18005668 (+)
G777111 NA other upstream 1805535 18001889 ~ 18002182 (+)
LOC110531703 LOC106577651 other downstream 192113 20009183 ~ 20090543 (+)
G779291 chd3 other downstream 222208 20039611 ~ 20040283 (+)
LOC110531706 naa38 other downstream 262033 20079382 ~ 20082084 (+)

Expression


Co-expression Network