LOC110531695 (LOC106577660)


Basic Information

Item Value
gene id LOC110531695
gene name LOC106577660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19862783 ~ 19868337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615015.2
CAATGTCAAGCTTCTCGTAGAAGAATACATCCGTTGGCGTCAAACGGTCTGTGGTTGTTGTGCTTAACATTTTAACGTTAGCGGTTGATAGCTAATTAACTATCAAATACAAGATGTGGCAGCCTGATCCTTACCATAATGAGTTGGTCTTTGTTATGGATGAATTAATGACGTCGTTGGAGGATGAAATTGAGAAATGTATGGCGGTCTTAGTCTTTTCCACACAAGACAGGACAGACATTGATGCAGGGGAGACGGGGGAATTTGAAAGAGAATCCAAGTCGGAGGTTAAAGTCCAGTTGACATGTGTGATGAAACAGTTCGTGAAACAGACTCTCACCAAAATCAACCAGTTGATCTCTAAAGGCACTGAAGCACTGCGTTCAGAGATATGCCAGAGTCAAAGTGAGATTAAATCTCTGAAAATGAAGCTATTGGAGATGACTGTTAGTAAGGAAGTACCTGAAAATACAGTGGAAAGAACCccagggacagaggaagaggaggaatggaCAGAAGCACCATTATCACCAGAGTTTGCAGAGGATTTTCAGGTTGACGTGCCAACTCCCAGTGGTGAGGCTGACAACACTACAAATGTCAAGAAGGAGACCACGATCAGAGCTAAAACCATAGCGTTGGAACAGTCATTTATATCTCTAGCTAAAATACCTTCCTCCTCACTCATTGAGTCTATCAAACAGGTGGCTATTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCACGCCTACAGACAAAAATCCAGTAAGCAGGCCTACAGACAATCAGGCCCCAAGTACAGACCCCCAAACTCCAGGTGGGGACTCTGTGGTGTCCACCAGAcccaggaggaagaagaagagaatAGAAGCGCAACCCACAGCGGCAGAATCAGACGGAAGTGAGGAAAACGCTGATGACCAATGGGAGGAGAATGCTAAAGCTGGACAAACCTCGAATGACAAATATGTTCACAACATAAAGCCAAGGCCCAACATAAAGAAAAAACAGACTACCACCACCAGGAAAGAGCACCACTGTCTGGACTGCGGTAAGGTTTTTAAGAATTCAAGTAATTTAAAACTGCATCAAcagactcacacaggagagagaccttATTGTTGTGAATTATGCGGGAAATGTTTCCCGACTGCTTGGAAGCTCAGAATACACCAAGCAGTGGTCCACAGAAGAGAGAAGCCACTTGAGTGTCCAACATGTGGGAAGTGCTTTGCAACAAAGCATTATTTGGACACTCACGCAAGCGTTCATTCAACAGAGAAACCATTTCGATGCCTCGTGTGTCAGAAGTGTTTTAAAAGTAAAAGTGGTCTCAAGGAACACACAATGTTGCACAATTCAAATTCAGATTCATATGCGTGTGACAAATGTCCAAAAACCTTTGTTAAGTTGAAATACCTCAAGAATCACCAGCTAACTCACAGTGGAGGAGGAGCTCACCGTTGTGAATTGTGTGGGAAAGGTTTCAAGACCCCTTCTGAGCTCAAACGGCACCAAGCATCAGTCCATAGGGGAGAGAAGCCATTCCAATGTCCCACATGTGGGAAGTGTTTCGCAGAGAATAAAAATTTGAAAATCCACGCAAGTGTTCATTCAGAAGAGAGAGCATTCCAGTGCCCTCAATGTCAGATGTGTTTCAAAACCAAGTATACTCTTAACGACCATAAGAAGACGCACACGGATTCCAAGCCGTATTCTTGCGACAAATGCCCAATGACCTTTATCCGGTCTTATTACCTCAAGATTCATCAAGCTTCGCACCTGACCAGCAAGCCATTCGTGTGCAGCCACTGTGGGAAAGGCTTCAAAGGTGAACGTGGGCTCAAGAGACATGAACGCACCCACACCGAAGACCCAACTTATACCTGTGACGAATGTGGCAAGGGTTTCTATCAACACGAATCATATAAAGTCCATGCGGCCTTGCACACCGGAGAGAAGCCGTTCACCTGTGATCACTGTGAAAAAACCTTTGCTCTGGCATCCTACCTTAAAACCCACATAGTGAAACTTCACTCTGTCACCGAACCCCACGTCTGTGGGAAATGTGGCAAGAAATATAAGGATTTCACCCATTTTAGAATCCATATGTTTCAGGGTTGTCAAGAGGCTGCGGCATTGGTTTGACTATAACAAGAATTGCCTATCATTGGAAATGACCATTTCTCTTCTTTCTAATGTTGGAAGGGATCAAAATATATATTGGAAATATATTGTACATGGAAATCAAGATATGGAggtaggtgggatgggctgagagtaacTGAGGGGTGGGATTAGAAACTCATAATCTGTGTAATAGTTAGGACTGAAAACACCATATCATGCATACCGGAAATGCCTGAGTACCATTTCAGGTGTAATGTGTATATCAAACTATTTCTGACATGTAATACCTTGTATAAAAAATACTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615015.2 True 2508 mRNA 0.44 3 19862783 19868337

Neighbor

gene id symbol gene type direction distance location
LOC110532957 LOC106577671 coding downstream 538051 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 551813 19310059 ~ 19310970 (-)
LOC110532955 NA coding downstream 569287 19292757 ~ 19293496 (-)
LOC110531676 nitr3 coding downstream 570426 19290034 ~ 19292357 (-)
LOC110532954 LOC106577681 coding downstream 601699 19259903 ~ 19261084 (-)
LOC110531696 LOC106577660 coding upstream 1101 19869438 ~ 19872456 (-)
LOC110531700 LOC106577652 coding upstream 81510 19949847 ~ 19961244 (-)
LOC110531702 LOC106577654 coding upstream 98632 19966969 ~ 19972714 (-)
LOC110531704 LOC106608762 coding upstream 153857 20022194 ~ 20075490 (-)
LOC110531705 LOC106577649 coding upstream 208420 20076757 ~ 20079422 (-)
G780232 LOC106577661 non-coding downstream 9971 19851111 ~ 19852812 (-)
G780218 NA non-coding downstream 28298 19834253 ~ 19834485 (-)
G780192 NA non-coding downstream 32618 19785445 ~ 19830165 (-)
G780209 NA non-coding downstream 38212 19817691 ~ 19824571 (-)
G780179 NA non-coding downstream 55965 19804358 ~ 19806818 (-)
G780277 NA non-coding upstream 67231 19935568 ~ 19939204 (-)
G780294 NA non-coding upstream 71484 19939821 ~ 19940043 (-)
G780295 NA non-coding upstream 71777 19940114 ~ 19940408 (-)
G780312 NA non-coding upstream 97010 19965347 ~ 19965610 (-)
G780322 NA non-coding upstream 111618 19979955 ~ 19980192 (-)
G778216 NA other downstream 1504680 18355441 ~ 18358103 (-)
G776822 NA other downstream 2202300 17659690 ~ 17660483 (-)
G776820 NA other downstream 2203380 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 2206458 17655988 ~ 17656325 (-)
LOC110531717 LOC106577635 other upstream 433741 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1062623 20930960 ~ 21272646 (-)
G782003 NA other upstream 1907381 21775718 ~ 21776210 (-)
G784602 NA other upstream 3868884 23737221 ~ 23739513 (-)

Expression


Co-expression Network