LOC110531696 (LOC106577660)


Basic Information

Item Value
gene id LOC110531696
gene name LOC106577660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19869438 ~ 19872456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615016.2
GTGGCAGTAACGCACCTTTCTCTGTCATGTCAAGCTGGCAGAAggatatatctactgtactgtcgTTGAAATATCTGTGTGTTCAATTTCATCCGTTTTTTTGTTAAAAATGTAACATAGCGGTTCATAATTAACTACCAAATTCAAGATGTGGCAGCCCGATCCTTTCCACAATGAGTTGGTCTCTATTATGGATGAATTAATCATGTCGTTGGAGGAGGAAATTTGCAAATGTATGGCGTTGTCGGTCTCCTCAACACAATACAGCACAGACATTGatgcaggagagacaggggaaattGAAAGAGAATCCAAGTTGCTAAAAGTCGTGTTGACATGTGTGATGAAAAAGTTCGTGAAACAGACTCACGCCAAAATCAACCAGTTGATCTCTAAAGGCACTGAAGCACTGCGTTCAGAGATATGCCAGAGTCAAAGTGAGATGAAATCTCTGAAAATGAAGCTATTGGAGATGACTGTTAGTAAGGAAGTACCTGAAAATACAGTGGAAAGAACCccagggacagaggaagaggaggaatggaCAGAAGGATCATTATCACCAGAGTTTGCAGAGGATTTTAAGGTTGACGTGCCAACTCCCAGTGGTGAGGCTGACAACACTACAAATGTCAAGAAGGAGACCACGATCAGAGCTAAAACCATAGCGTTGGAACAGTCATTTATATCTCTAGCTAAAATACCTTCCTCCTCACTCATTGAGTCTATCAAACAGGTGGCTATTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCGAGCAGGCCTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCAGGCCTACAGACAAACAGGCAGCAAGCACGCCTACAGACAAAAATCCAGTAAGCAGGCCTACAGACAATCAGGCCCCAAGTACAGACCCCCAAACTCCAGGTGGGGACTCTGTGGTGTCCACCAGACCCAGGAGGAAGAAGACGAGAATAGAAGCGCAACCCACAGCGGCAGAATCAGACGGAAGTGAGGAAAACGCTGATGACCAATGGGAGGAGAATGCTAAAGCTGGACAAACCTCGAATGACAAATATGTTCACAACATAAAGCCAAGGCCCAACATAAAGAAAAAACAGACTACCACCACCAGGAAAGAGCACCACTGTCTGGACTGCGGTAAGGTTTTTAAGAATTCAAGTAATTTAAAACTGCATCAAcagactcacacaggagagagaccttATTGTTGTGAATTATGCGGGAAATGTTTCCCGACTGCTTGGAAGCTCAGAATACACCAAGCAGTGGTCCACAGAAGAGAGAAGCCACTTGAGTGTCCAACATGTGGGAAGTGCTTTGCAACAAAGAGTTATTTGGACACTCACGCAAGCGTTCATTCAACAGAGAAACCGTTCCGATGCCTCGTGTGTCAGAAGTGTTTTAAAAGTAAAAAGGGCTTCAAGGAACACACAACGATGCACAATTCAAATTCAGATTCATATGCGTGTGACAAATGTCCAAAAACCTTTGTTAAGTTGAAATACCTCAAGAATCACCAGCTAACTCACAGTGGAGGAGGATCTCACCGTTGTGAATTGTGTGGGAAAGGTTTCAAGACTCCTTCTCAGCTCAAACAACACCAAGCATCAGTCCATAGGGGAGAGAAGCCATTCCAATGTCCCACATGTGGGAAATGCTTCGCAACAAAGACAAATTTGAAAATTCACACAAGTGTTCATTCAGGGGAGAGAGCATTCCAGTGCCCTCAATGTCAGATGTGTTTCAAAACCAAGTATACTCTTAATGCCCATAAGAAGACGCACACGGATTCCAAGCCGTATTCTTGCGACAAATGCCCAATGACCTTTATCCGGTCACATTACCTCAGAAGGCATGAGATCTCGCACCTGACCAGCAAGCCATTCGTGTGCAGCCACTGTGGGAAAGGCTTCAAAGGTGAACGTGGGCTCAAGGGACACGAACGCACCCACACCGAAGACCCAACTTATACCTGTGACGAATGTGGCAAGGGTTTCTATCAACACGAATCGTTTCAAGTCCATGCGGCCTTGCACACCGGAGAGAAGCCGTTCACCTGTGATTACTGCAGTAAAACCTTTGCTCTGGCGTCCTACCTTAAAACCCACATCGCAAATCATCACTCTGTCACCAAACCCCACGTCTGTGGGAAATGTGGCAGGAAATATAAGGATTTCACCCATTTCAGAATCCATATGTTTCAGGGTTGTCAAGAGGAGGCTGCAGCGTTGGTTTGACGACTTATTGTTGTTATAAGGTGTAATATGTTATGTTTTCACTACAAACATGCATGTTTCCTTGCACAGTAccaataacatttgttttgaatagattgttttttttatgtctaCAGACTTGGCCAGTAATAAAATCATACCAGGGGATCTATAACTCTTAAATTGCACCTCTGGTTGGATGCAGGTTAAACTTTCATTCTGACAATGCTTTGTCAGTCATTGTTATTTTGGAATTGTGATTAAAGTTCTAATGTTCTTGTTTCACTACAAA

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615016.2 True 2579 mRNA 0.44 3 19869438 19872456
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531695 LOC106577660 coding downstream 1101 19862783 ~ 19868337 (-)
LOC110532957 LOC106577671 coding downstream 544706 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 558468 19310059 ~ 19310970 (-)
LOC110532955 NA coding downstream 575942 19292757 ~ 19293496 (-)
LOC110531676 nitr3 coding downstream 577081 19290034 ~ 19292357 (-)
LOC110531700 LOC106577652 coding upstream 77391 19949847 ~ 19961244 (-)
LOC110531702 LOC106577654 coding upstream 94513 19966969 ~ 19972714 (-)
LOC110531704 LOC106608762 coding upstream 149738 20022194 ~ 20075490 (-)
LOC110531705 LOC106577649 coding upstream 204301 20076757 ~ 20079422 (-)
LOC110531707 LOC106577647 coding upstream 215651 20088107 ~ 20103087 (-)
G780232 LOC106577661 non-coding downstream 16626 19851111 ~ 19852812 (-)
G780218 NA non-coding downstream 34953 19834253 ~ 19834485 (-)
G780192 NA non-coding downstream 39273 19785445 ~ 19830165 (-)
G780277 NA non-coding upstream 63112 19935568 ~ 19939204 (-)
G780294 NA non-coding upstream 67365 19939821 ~ 19940043 (-)
G780295 NA non-coding upstream 67658 19940114 ~ 19940408 (-)
G780312 NA non-coding upstream 92891 19965347 ~ 19965610 (-)
G780322 NA non-coding upstream 107499 19979955 ~ 19980192 (-)
G780209 NA other downstream 44867 19817691 ~ 19824571 (-)
G778216 NA other downstream 1511335 18355441 ~ 18358103 (-)
G776822 NA other downstream 2208955 17659690 ~ 17660483 (-)
G776820 NA other downstream 2210035 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 2213113 17655988 ~ 17656325 (-)
LOC110531717 LOC106577635 other upstream 429622 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1058504 20930960 ~ 21272646 (-)
G782003 NA other upstream 1903262 21775718 ~ 21776210 (-)
G784602 NA other upstream 3864765 23737221 ~ 23739513 (-)

Expression

LOC110531696(LOC106577660) Expression in all Baseline Samples

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LOC110531696(LOC106577660) Expression in each Bioproject

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LOC110531696(LOC106577660) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network