LOC110533004


Basic Information

Item Value
gene id LOC110533004
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19942675 ~ 19946522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053202.1
AACAAATACTTCATATCTGAATTCTGCCATCTTTATGCAACTTTGCCATTTTACTTCTGATAATGGAAGAACAATTGAAAGACATTGCTGTAGTTCTTCTGATGTTTGTCTATTTGCTTGTCCCTTGCTGCTAGAATTGCAATCTGTATTCCAAGATCTGCAGCTTCATGAAAAATGTCAGCTGGATTTCACAGTTTCCTTACTAGATGCAGTGTTTGTGGGTGTACATGATGCTGTGCCTCCAAGGGATGGACTACCAGTGGTGAATGGGATTGTGTTCTACAAGCAATAGTCACCCGAAGACGGGCTTGTCATCAGACATCTTATAGCTTTGCCAGAGGCTAGACTCCCATTGTGATGCCTCGGACTCTGACGATGACACGGACTACAAAGTATCCTGTTACAACAATCTACTAAATTAATTTGGGTCCCCTGGCCACATCCAGCAATTTAAACTAGCATTGAATCAATACTTTCATGTTATTACTCTTTAAAATTAATAAATTGTTGGCTCTTGAAGACTTCCTccagtacttttttttttattttaatttaaaaaaaaaattttttttaaagcaatatACCAAGCTTAACTGCAGacttcaaggagttggtctgagTGACTTAGTGATGTGCAAATTCCATGTTTTGTGCAGCTGTATAAAGACAAGttggactgcctgtgtaaatgcagcctttgCTCAGGGGTATACAACTCATACCCTACAAGGTCCAGCGCCTGCTGGTTTTGTTCTGCTAATGACCTTGTGTTCCAGGTCTGAAATCAGTCCCAAAAATTCCAGTCTTGAATTTGAGGAACTTACAGCATCCAGGAATGTTTACTTGTTTTGAGCCCTTTTCTCTAGGCTTAAAATTAGCGTTCAAATGGGGCAGAGATTACATGACTGCTACTTGGACACTTAAATAGTGTTACCCAACATTATAGCAAAACCCTTAGCATGCTCATTGTGACAATCTGTCATTCTTTAGCAAACATGTTTAGTTATGCAGTCGCCTCAGCAATACATTAACTCATGCTTGTAATTTAAGGTGCAATCTGCAGTTGCTTTTGGGGCATTTATGCCCATTGATTTTATATAGTGAtttgaaagtattcataccccttcaccACATTGTTCACAAGTGGATAAAATCTTACTTGGACAGGTTTtctagaaatgtttgaaaatgtaagGTCTGTACTCCAGTCATGTGAAGTCAATGAAAGCCTAATTTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053202.1 True 1240 mRNA 0.38 4 19942675 19946522

Neighbor

gene id symbol gene type direction distance location
LOC110531699 LOC106577657 coding upstream 3473 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 28537 19876221 ~ 19914138 (+)
LOC110531693 LOC106577661 coding upstream 88955 19825712 ~ 19853720 (+)
LOC110531694 LOC106577663 coding upstream 118136 19817663 ~ 19824606 (+)
LOC110532967 ndufs2 coding upstream 125272 19807717 ~ 19817403 (+)
LOC110531703 LOC106577651 coding downstream 62661 20009183 ~ 20090543 (+)
LOC110531706 naa38 coding downstream 132860 20079382 ~ 20082084 (+)
LOC110532969 NA coding downstream 220073 20166595 ~ 20173950 (+)
LOC110531712 LOC106577641 coding downstream 240205 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 293235 20239757 ~ 20247172 (+)
G779212 NA non-coding upstream 24291 19916391 ~ 19918384 (+)
G779189 NA non-coding upstream 67864 19874487 ~ 19874811 (+)
G779184 LOC106577660 non-coding upstream 70632 19864914 ~ 19872043 (+)
G779183 LOC106577660 non-coding upstream 71683 19862674 ~ 19870992 (+)
G779227 NA non-coding downstream 1639 19948161 ~ 19948382 (+)
G779266 NA non-coding downstream 55231 20001753 ~ 20002034 (+)
G779270 NA non-coding downstream 58026 20004548 ~ 20004785 (+)
G779306 chd3 non-coding downstream 115633 20062155 ~ 20062711 (+)
LOC110531664 LOC106577696 other upstream 1285101 18656177 ~ 18673318 (+)
G777396 NA other upstream 1442657 18499614 ~ 18500018 (+)
G777165 NA other upstream 1834193 18108019 ~ 18108482 (+)
G779291 chd3 other downstream 93089 20039611 ~ 20040283 (+)
G779964 NA other downstream 1155057 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 3097485 23044007 ~ 23067530 (+)

Expression


Co-expression Network