LOC110531700 (LOC106577652)


Basic Information

Item Value
gene id LOC110531700
gene name LOC106577652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19949847 ~ 19961244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615028.2
GACAGGTGTGGCTGCCACTGACAGTCAAAATGGTGCCAATCATGGATGAAGTTTGATGAATTGcaaaagaaaatagagaaagatAAGGAAATAGAAATTAAGTTACTTTTCACTACACCTTTACACAATACCAAACATGACCATACCTTGTACAATGAAAGTTAGGGCTATCAAAATCATTCTGTGCATACTGTTACTCTGTGCTACACTCAGTACTCCAACTCCTGTACCAGTTGGAACATTCCGGTCTGAGTGTCATGAGCGTCACTTCTGGCTGTTTGTCAGGTCTGGCTTCCTTGGCATTATGAGCCGATTCGACGTTCAAGACCACCAGGGAGTTCACTTCCTGTCCGGCCGAAAGGCCACTGAGTGTGGCTACACCATGCTCTTCAATCCCCATGGAGACCTGGTGTTCCGTGCCTCGTTCCTCGCCTGCCACGTCAACAACCAGGGGGACTCAGAGTTCCGTCTGAAAGTGTGGTTGGTGACCCGGCAGGTGAATGGGAGGGACCTAGGGTACCCCTTCCTGCTCCACTGCTCAGCCCAGTGGCCCTGGGGCTTCCGGGAGCTCGTCTGCGAGGAGAGCTACATGGAGGTGTCCATAAATGGACCGGTCCCAGCTGCATTACACTCTGGGCAGGAGAAAAAGGAGGTGGGAAAGAGCGGCATGATGTTCCACAGACCAGGCCACACCAAGGAGGAGGTTAGACCCAGGACCATGACGGAGGCCAGTGCCCTGGGCTACCACGTCTCTGAGTCAGGCTCCAGGATTATCCTGCGCTGCCCCtactcttcacccctctcctacACCATCAAGGAGAAAGGGGTTGAGTTGGAGGTGGTCAATGCTACCATCCTGTACCCACATCAAGGGAAGGTCCTTGCCATCGATGCCACAGTGGCCTGCTCCATGAATGAGGCGACAGTGGATGGTACCCACCTGCTCTGGCCTGTCCCCCATGTCCTCTCCCCCCTGGTACATGGGAGGTTCAGGGACAGGGGCATGAGAATAGGGGTGGAGACGCTTGCCCTGAGTGAGTCTGTGATCAAGGACAGGGGGTATGAGATAAACCTGAGGGATGGAGTGGTGGAGGTCAGCGTTCCATTCGGAGCCGAAGGAACACACattaagAGTGgtgtgttggagggccagtacaGCCAGTCTCTGTCTGTAGACCTGTTCTACATGCACCAGTGGGAGGATGACCGCTGGCCCCTCACCCAGCATCGCTCCTTCAGGTTCCTCAAGACCGCCTACGTCCCCCGGACCCCCATACTTACAGACAACACCATATCGTCCCAGAAGCTGTTCTCTGTCTCCCTGGGTGTGTTCCCTCCTGACGTGTCCCTCCACAACGTCaccggggggagggagggggacgcTTTGTCCTGGGTCCAGGTCCCCTACCCCAACGGGTCACATTCCTACCAGCTTCATGCCCCCTTCTCACACTCCTCCGTTCTTCAGAAGTATATTGATGGGGGCTATAGGAGGTACACCctccctctcaccttttccctgaCCATCTCACCCCATGGAGAGGTCTTCTACCATAATGCCACCATTGTGAGTGATGTTCAAGAGCAGACAgCCCCAGAACCTCCCAGGCTGGAGGGTAAGTGCACTGAGAGGGGCCTCCTGGTGCTACTGCACTATGGGGCCCTGGAGCGGAGCTGGGAGCTCTTCATTGGGGACCGCCGGCTGGACTGGGAGCTAGTGGAAATGGGGGGCTTTACCGTGGAAACAGAAGAGGACTACTTTAGTGTGGAGATCCCACTCTATAGTCCGGACATGACCTATGAGGAAGTGAGTTTGCAGGGTGTTGTTGGCCGTCTGGAGGTCAGTGTGGTGGACATAGACACACTCAAGGTGGAGAACAGCCTCATCCATCGCTGCACCTTCCGTGTCAGAGAGTTACTGGTGTGCTTACCAGAGGGGAGGATGGTCGTAGTGACTGATACGTCACGTACCATCCCGCCCACCCAACCAAAACACACCACCCTTTTGGACCCCAGCTGTGTCCCCCAAGAGACGGACAGCGTCAGGGCCCTATTCAATTTCTCCATGGATTCCTGTGGTACCATTGCGACCGTTGAGGGGGATTTCCTAGTATATGAGAACCAGGTGCTGTTCCCCAAAGAACTTATCACCACGGATGACCCCCCCAGCCACAGAGACTCCCcttacaggctGACCATCCAGTGCCGCTACCCTGCCATCGACACCGGCATTGTCTCCATTGAACACCCTGTCCATCCAACCTTTGCCCTCTCACCTATGCTGCCTCTTAAACACACTCAAAGGGAGGCCTCCCGCAGTGGGCAGTATGTGGCAGTGGTGTGTGTGGCGATTGTTGTGATGGGAGCTTTGATTGCTGCTACATTGAAGATGCTCTGTTGCccaataaaaatgtaaaacatgtttGCAAA

Function

NR:

description
uncharacterized protein LOC110531700

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615028.2 True 2430 mRNA 0.55 16 19949847 19961244

Neighbor

gene id symbol gene type direction distance location
LOC110531696 LOC106577660 coding downstream 77391 19869438 ~ 19872456 (-)
LOC110531695 LOC106577660 coding downstream 81510 19862783 ~ 19868337 (-)
LOC110532957 LOC106577671 coding downstream 625115 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 638877 19310059 ~ 19310970 (-)
LOC110532955 NA coding downstream 656351 19292757 ~ 19293496 (-)
LOC110531702 LOC106577654 coding upstream 5725 19966969 ~ 19972714 (-)
LOC110531704 LOC106608762 coding upstream 60950 20022194 ~ 20075490 (-)
LOC110531705 LOC106577649 coding upstream 115513 20076757 ~ 20079422 (-)
LOC110531707 LOC106577647 coding upstream 126863 20088107 ~ 20103087 (-)
LOC110531708 LOC106577645 coding upstream 144896 20106140 ~ 20128782 (-)
G780295 NA non-coding downstream 9439 19940114 ~ 19940408 (-)
G780294 NA non-coding downstream 9804 19939821 ~ 19940043 (-)
G780277 NA non-coding downstream 10643 19935568 ~ 19939204 (-)
G780232 LOC106577661 non-coding downstream 97035 19851111 ~ 19852812 (-)
G780218 NA non-coding downstream 115362 19834253 ~ 19834485 (-)
G780312 NA non-coding upstream 4103 19965347 ~ 19965610 (-)
G780322 NA non-coding upstream 18711 19979955 ~ 19980192 (-)
G780335 NA non-coding upstream 39771 20001015 ~ 20001246 (-)
G780339 NA non-coding upstream 43624 20004868 ~ 20005269 (-)
G780279 LOC106577651 non-coding upstream 55298 20016542 ~ 20025646 (-)
G780209 NA other downstream 125276 19817691 ~ 19824571 (-)
G778216 NA other downstream 1591744 18355441 ~ 18358103 (-)
G776822 NA other downstream 2289364 17659690 ~ 17660483 (-)
G776820 NA other downstream 2290444 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 2293522 17655988 ~ 17656325 (-)
LOC110531717 LOC106577635 other upstream 340834 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 969716 20930960 ~ 21272646 (-)
G782003 NA other upstream 1814474 21775718 ~ 21776210 (-)
G784602 NA other upstream 3775977 23737221 ~ 23739513 (-)

Expression


Co-expression Network