LOC110531702 (LOC106577654)


Basic Information

Item Value
gene id LOC110531702
gene name LOC106577654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19966969 ~ 19972714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987530.1
GCGTCACCAGTCATTCAAATTCAGAGGATGAGTATTGCTCACGCCAACGAGAAGAGAGTATGAGTGTTTAGTTCCGAACATTCATAGTAGCCTAAGTTGTGCCACGTTCTTTGCGAGTTTTAGTCAATTAACATTATTATTGGAATTTAGCGTCAATCTTGAGCAGGCAATGTTGAACGAAGCTTCGGGTCAGAAGTACTTTGATGTTCGAAACTTTATGAAGACGGGTACTCATAGAAGCGCCAGGACATCATTTGCATGAAACTGCAGCAAGATCAAGACGTTGAGTCCAACTGGACCCGATTTCAAAGAAGCTGGGAAACAAGCCTGGGGAAAAGGACTGAGGACCACGACACCTGTGCCCAGTCTACTCCCAAAACGAACCCCTCCCACAAAAAAAGAAACCTTAAATCTACCATGTCTCTCAACACCTTCCACCTGATGGAGACCCTCAAGAACTCCCCGTCCGTTTTACGCCGCCGCTTCCGCCGTGACCGCACCGAGTCCCTCTCCCACGGCGACCCGCTCTTCAAGGTCCACTACCTGGGCACTGAGAAAATCTTCTCCCTGGATCTACAGCAGGCCCAGGATGCCATAGCCCGGCTGCTCGACGGGGCCTCCAACGGAAAGAAACTGAGCAAAGACCACGCATTGGTGGTTCGTCCACGCTATGTTGAAGTCAAAGAGCTCAGCACTGGACGCCAGCTCACTAAGACGTACCTCCAGGACATCGCCTACTGCGCGGCCGACGCCACCAGACCCAACGTGTTTCTGTACATCTGTAAGCATCACGGGCAACAGCTGCACTGCCGGGTGTTCTGGTGTAGCCGGGCAGAGCGGGCACGGGACATGACGGCCTGCCTGGCACACTCCTTCCAGAGGGCACTGAATGACTGGCAGGGGGACGGGGACGTTGGGTTAGGGGGAAGTACCGACACGCTGACCCCAGAAAAGGAcggggtgaaggagggagaggataTGCCCAGCACCACTACTAACCCCAAAAGCTCCATACAACCAGACAACTGTGGAAGAGTCCGTTGGAAGAAGAGGAGCTCCCTGTCTCGTAGTCCACTGAGAGCCATGACCAGGAAGGGCTCTGCCTCTGACATCTGGCACTGAGTCCCCGATCCCCAGCATGGGACACGGAACTGACATCCCCAGTGGCTAGCTACAGCACGGATGGAGGGATTGAAAGAACCCACCACTACTGGACACAACAGGATTGAAAAAAAAGGAGTGTGAGGGAGATCACTGCTGGACTTTCTTTCAAATGAGACATTGCCTTGCTTACATGGTGAGTCTACAGTACCGTTCATGACTGGCATGAATGGTAGCCTACAAACTGTGGAAGTTAatgactagctagctaccttggcTTTTGCCTCTGGATTACTAGAGAACAAGGTGCTAGGTTGATAGCGTTGTACTGTACGCTGTTGGTAGAAACCAGTATTCACCTCAGTGGCCTTGTGACTCGCTTTCACTGTTGGAACGCTTCAAGGCTAAACTGCTAATTTCCAATGCTACTCCAAGTTACTTGTTTTCCACTGAGTGGCCTTGATACTCTGAACTGTCAGTTATGCTTAGAAGAAAGGAGCTCAAGGTCCTGTGTGCCTTTTTTAGCTAGACAAGGATATGACTACAGAGTTTACCAAACCTCAATTTCCTCTCCATACAATGCTGAACACAGCCTGGACTGGTTGAAACTGGTCAGACAGTCATGGCAATgttacaaatgtttttttaaaaaacagacgtttgtatttattttaatgaGAAGTCTTGTTTGTAACACACGTTTCATGCACCTCTTCTCTTCCTGAAACACtagattgttttttttaaagggagGAGGAGCTTAAGTTTGAGCCGAATGTGAGCAGTGTTCGTCTTGGGAGAGGGGTTAAAAacggaggtgtgtgtgagagggttcATGGGGCATAAAGGGTTCATTTAAATTTAAGCAGACCATAGAAGAACATGGGCTATGTTGACATAATTACACAGTAGTGTGCGTTCATAGGCAGGGTTCTAATACATTTTAGTATCAATTATTCGGTTCAGACTTCACCACGTGTAATTTAGTCCAGTtgttcccaacctttttcggtcactgtaccaccaactgaatttctctgcctggagtacccctgaagtacaccctcatgtgcattttaccagtaggactatggtctcatgagtcttatCAAGTACCCCCTGTGGCTAGACCAAGTACCCCCAGGTGTCCTAGTACTCTTGTTGGGAACCACTAGCCTAGTCAATGCACACTGACTGttcacattatttattttttgtcataACATATTACTTACTATTCAAGTAAAATGTAATCCTAAATCAAGTAAAATGTAATCCTTAATTAAGTTCCATAAGCTTAATTTGTTCCTATAAGGTGTTAGTGTTTGCTAGAACTgagtttttcttcttcttcatactgtcacaggaggttggtggcaccttaattggggaggacagactCGTAATAGCTGGCGTGGAATAGTATccaatacatcaaacacatggtttccatgctTTTGCCATTACATttgttccgttccagccattattatgagctgtcctcccctcagcagcctccattgaTGTATGTATATATTTGCATTTATGTGGAAAAATCACTCACCCATGATCCTCCTTGTTCCTCATTATTCCCGTGTGGGTGAAGTATAACCCTGGGTGAGTGATTTTGGGGGCATGTGTGGGGCAGGAATGTTGGTTTGGAACTTCGGCAGTGCACCTGCATTCCTATGGGGACATTAAAGTTCTCGTATCCTCCTTGGCTCTGcccactctctcccctcagtCTGGCTTAACCTAACCTCATGACTCTGCATGTTTCATAGCATTAGTGTGTTGGCGTCCTGGCCCCAAGCTCAAATACCGGTCTACACACAAGCACTCTCCTCACACACTTTCTCATGCCACATCCGCTCATTCCATACAATATACTTCTGACTCCTCTGACCACCAcgtcagggttgtattcattggGCACCTCATATCTCCATGGTTTACAGTGAAAGGTGCCTCAGTTATTTGACTTGACAAGATGTCAATGATATCAATGGatagttttttttaaaaccattttattttaaatgactGTTGTGCATCTCAAACGACAAATGGCACAACCCCATCTTGGGAGGGCAAGTGTCTGGTTTTATGTTGTACTTGTTTTGTACATCCTTGTTTACATATTTTTAAATGCGTGTAAGCTATGGAATAAACTTTCATACAATGATA
>XM_021615030.2
GGAGGCGTCACCAGTCATTCAAATTCAGAGGATGAGTATTGCTCACGCCAACGAGAAGAGATTATGAAGACGGGTACTCATAGAAGCGCCAGGACATCATTTGCATGAAACTGCAGCAAGATCAAGACGTTGAGTCCAACTGGACCCGATTTCAAAGAAGCTGGGAAACAAGCCTGGGGAAAAGGACTGAGGACCACGACACCTGTGCCCAGTCTACTCCCAAAACGAACCCCTCCCACAAAAAAAGAAACCTTAAATCTACCATGTCTCTCAACACCTTCCACCTGATGGAGACCCTCAAGAACTCCCCGTCCGTTTTACGCCGCCGCTTCCGCCGTGACCGCACCGAGTCCCTCTCCCACGGCGACCCGCTCTTCAAGGTCCACTACCTGGGCACTGAGAAAATCTTCTCCCTGGATCTACAGCAGGCCCAGGATGCCATAGCCCGGCTGCTCGACGGGGCCTCCAACGGAAAGAAACTGAGCAAAGACCACGCATTGGTGGTTCGTCCACGCTATGTTGAAGTCAAAGAGCTCAGCACTGGACGCCAGCTCACTAAGACGTACCTCCAGGACATCGCCTACTGCGCGGCCGACGCCACCAGACCCAACGTGTTTCTGTACATCTGTAAGCATCACGGGCAACAGCTGCACTGCCGGGTGTTCTGGTGTAGCCGGGCAGAGCGGGCACGGGACATGACGGCCTGCCTGGCACACTCCTTCCAGAGGGCACTGAATGACTGGCAGGGGGACGGGGACGTTGGGTTAGGGGGAAGTACCGACACGCTGACCCCAGAAAAGGAcggggtgaaggagggagaggataTGCCCAGCACCACTACTAACCCCAAAAGCTCCATACAACCAGACAACTGTGGAAGAGTCCGTTGGAAGAAGAGGAGCTCCCTGTCTCGTAGTCCACTGAGAGCCATGACCAGGAAGGGCTCTGCCTCTGACATCTGGCACTGAGTCCCCGATCCCCAGCATGGGACACGGAACTGACATCCCCAGTGGCTAGCTACAGCACGGATGGAGGGATTGAAAGAACCCACCACTACTGGACACAACAGGATTGAAAAAAAAGGAGTGTGAGGGAGATCACTGCTGGACTTTCTTTCAAATGAGACATTGCCTTGCTTACATGGTGAGTCTACAGTACCGTTCATGACTGGCATGAATGGTAGCCTACAAACTGTGGAAGTTAatgactagctagctaccttggcTTTTGCCTCTGGATTACTAGAGAACAAGGTGCTAGGTTGATAGCGTTGTACTGTACGCTGTTGGTAGAAACCAGTATTCACCTCAGTGGCCTTGTGACTCGCTTTCACTGTTGGAACGCTTCAAGGCTAAACTGCTAATTTCCAATGCTACTCCAAGTTACTTGTTTTCCACTGAGTGGCCTTGATACTCTGAACTGTCAGTTATGCTTAGAAGAAAGGAGCTCAAGGTCCTGTGTGCCTTTTTTAGCTAGACAAGGATATGACTACAGAGTTTACCAAACCTCAATTTCCTCTCCATACAATGCTGAACACAGCCTGGACTGGTTGAAACTGGTCAGACAGTCATGGCAATgttacaaatgtttttttaaaaaacagacgtttgtatttattttaatgaGAAGTCTTGTTTGTAACACACGTTTCATGCACCTCTTCTCTTCCTGAAACACtagattgttttttttaaagggagGAGGAGCTTAAGTTTGAGCCGAATGTGAGCAGTGTTCGTCTTGGGAGAGGGGTTAAAAacggaggtgtgtgtgagagggttcATGGGGCATAAAGGGTTCATTTAAATTTAAGCAGACCATAGAAGAACATGGGCTATGTTGACATAATTACACAGTAGTGTGCGTTCATAGGCAGGGTTCTAATACATTTTAGTATCAATTATTCGGTTCAGACTTCACCACGTGTAATTTAGTCCAGTtgttcccaacctttttcggtcactgtaccaccaactgaatttctctgcctggagtacccctgaagtacaccctcatgtgcattttaccagtaggactatggtctcatgagtcttatCAAGTACCCCCTGTGGCTAGACCAAGTACCCCCAGGTGTCCTAGTACTCTTGTTGGGAACCACTAGCCTAGTCAATGCACACTGACTGttcacattatttattttttgtcataACATATTACTTACTATTCAAGTAAAATGTAATCCTAAATCAAGTAAAATGTAATCCTTAATTAAGTTCCATAAGCTTAATTTGTTCCTATAAGGTGTTAGTGTTTGCTAGAACTgagtttttcttcttcttcatactgtcacaggaggttggtggcaccttaattggggaggacagactCGTAATAGCTGGCGTGGAATAGTATccaatacatcaaacacatggtttccatgctTTTGCCATTACATttgttccgttccagccattattatgagctgtcctcccctcagcagcctccattgaTGTATGTATATATTTGCATTTATGTGGAAAAATCACTCACCCATGATCCTCCTTGTTCCTCATTATTCCCGTGTGGGTGAAGTATAACCCTGGGTGAGTGATTTTGGGGGCATGTGTGGGGCAGGAATGTTGGTTTGGAACTTCGGCAGTGCACCTGCATTCCTATGGGGACATTAAAGTTCTCGTATCCTCCTTGGCTCTGcccactctctcccctcagtCTGGCTTAACCTAACCTCATGACTCTGCATGTTTCATAGCATTAGTGTGTTGGCGTCCTGGCCCCAAGCTCAAATACCGGTCTACACACAAGCACTCTCCTCACACACTTTCTCATGCCACATCCGCTCATTCCATACAATATACTTCTGACTCCTCTGACCACCAcgtcagggttgtattcattggGCACCTCATATCTCCATGGTTTACAGTGAAAGGTGCCTCAGTTATTTGACTTGACAAGATGTCAATGATATCAATGGatagttttttttaaaaccattttattttaaatgactGTTGTGCATCTCAAACGACAAATGGCACAACCCCATCTTGGGAGGGCAAGTGTCTGGTTTTATGTTGTACTTGTTTTGTACATCCTTGTTTACATATTTTTAAATGCGTGTAAGCTATGGAATAAACTTTCATACAATGATA

Function

NR:

description
uncharacterized protein LOC109906484

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987530.1 False 3288 mRNA 0.46 4 19966969 19972710
XM_021615030.2 True 3134 mRNA 0.47 4 19966969 19972714

Neighbor

gene id symbol gene type direction distance location
LOC110531700 LOC106577652 coding downstream 5725 19949847 ~ 19961244 (-)
LOC110531696 LOC106577660 coding downstream 94513 19869438 ~ 19872456 (-)
LOC110531695 LOC106577660 coding downstream 98632 19862783 ~ 19868337 (-)
LOC110532957 LOC106577671 coding downstream 642237 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 655999 19310059 ~ 19310970 (-)
LOC110531704 LOC106608762 coding upstream 49480 20022194 ~ 20075490 (-)
LOC110531705 LOC106577649 coding upstream 104043 20076757 ~ 20079422 (-)
LOC110531707 LOC106577647 coding upstream 115393 20088107 ~ 20103087 (-)
LOC110531708 LOC106577645 coding upstream 133426 20106140 ~ 20128782 (-)
fis1 LOC106577644 coding upstream 159288 20132002 ~ 20135504 (-)
G780312 NA non-coding downstream 1359 19965347 ~ 19965610 (-)
G780295 NA non-coding downstream 26561 19940114 ~ 19940408 (-)
G780294 NA non-coding downstream 26926 19939821 ~ 19940043 (-)
G780277 NA non-coding downstream 27765 19935568 ~ 19939204 (-)
G780232 LOC106577661 non-coding downstream 114157 19851111 ~ 19852812 (-)
G780322 NA non-coding upstream 7241 19979955 ~ 19980192 (-)
G780335 NA non-coding upstream 28301 20001015 ~ 20001246 (-)
G780339 NA non-coding upstream 32154 20004868 ~ 20005269 (-)
G780279 LOC106577651 non-coding upstream 43828 20016542 ~ 20025646 (-)
G780278 NA non-coding upstream 132111 20104825 ~ 20105899 (-)
G780209 NA other downstream 142398 19817691 ~ 19824571 (-)
G778216 NA other downstream 1608866 18355441 ~ 18358103 (-)
G776822 NA other downstream 2306486 17659690 ~ 17660483 (-)
G776820 NA other downstream 2307566 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 2310644 17655988 ~ 17656325 (-)
LOC110531717 LOC106577635 other upstream 329364 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 958246 20930960 ~ 21272646 (-)
G782003 NA other upstream 1803004 21775718 ~ 21776210 (-)
G784602 NA other upstream 3764507 23737221 ~ 23739513 (-)

Expression


Co-expression Network