Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110531708 |
| gene name | LOC106577645 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 20106140 ~ 20128782 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| claudin-15-like |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021615039.2 | False | 1863 | mRNA | 0.42 | 5 | 20106140 | 20108920 |
| XM_036987534.1 | True | 941 | mRNA | 0.50 | 6 | 20106922 | 20128782 |
20,096,000
20,100,000
20,104,000
20,108,000
20,112,000
20,116,000
20,120,000
20,124,000
20,128,000
20,132,000
20,136,000
20,140,000
20,144,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531707 | LOC106577647 | coding | downstream | 3053 | 20088107 ~ 20103087 (-) |
| LOC110531705 | LOC106577649 | coding | downstream | 26718 | 20076757 ~ 20079422 (-) |
| LOC110531704 | LOC106608762 | coding | downstream | 30650 | 20022194 ~ 20075490 (-) |
| LOC110531702 | LOC106577654 | coding | downstream | 133426 | 19966969 ~ 19972714 (-) |
| LOC110531700 | LOC106577652 | coding | downstream | 144896 | 19949847 ~ 19961244 (-) |
| fis1 | LOC106577644 | coding | upstream | 3220 | 20132002 ~ 20135504 (-) |
| LOC110531711 | LOC106577643 | coding | upstream | 22885 | 20151667 ~ 20168586 (-) |
| LOC110531713 | LOC106577639 | coding | upstream | 90228 | 20219010 ~ 20238861 (-) |
| ponzr1 | LOC106608771 | coding | upstream | 118706 | 20247488 ~ 20254228 (-) |
| LOC110531717 | LOC106577635 | coding | upstream | 173269 | 20302051 ~ 20324316 (-) |
| G780278 | NA | non-coding | downstream | 241 | 20104825 ~ 20105899 (-) |
| G780279 | LOC106577651 | non-coding | downstream | 80494 | 20016542 ~ 20025646 (-) |
| G780339 | NA | non-coding | downstream | 100871 | 20004868 ~ 20005269 (-) |
| G780335 | NA | non-coding | downstream | 104894 | 20001015 ~ 20001246 (-) |
| G780322 | NA | non-coding | downstream | 125948 | 19979955 ~ 19980192 (-) |
| G780379 | NA | non-coding | upstream | 7728 | 20136510 ~ 20150178 (-) |
| G780407 | NA | non-coding | upstream | 74419 | 20203201 ~ 20203426 (-) |
| G780409 | NA | non-coding | upstream | 76057 | 20204839 ~ 20205120 (-) |
| si:ch73-335l21.2 | LOC106577636 | non-coding | upstream | 196270 | 20324417 ~ 20326689 (-) |
| G780515 | NA | non-coding | upstream | 229302 | 20358084 ~ 20358608 (-) |
| G780209 | NA | other | downstream | 281569 | 19817691 ~ 19824571 (-) |
| G778216 | NA | other | downstream | 1748037 | 18355441 ~ 18358103 (-) |
| G776822 | NA | other | downstream | 2445657 | 17659690 ~ 17660483 (-) |
| G776820 | NA | other | downstream | 2446737 | 17659016 ~ 17659403 (-) |
| LOC110531730 | adgrl3 | other | upstream | 802178 | 20930960 ~ 21272646 (-) |
| G782003 | NA | other | upstream | 1646936 | 21775718 ~ 21776210 (-) |
| G784602 | NA | other | upstream | 3608439 | 23737221 ~ 23739513 (-) |
| G784652 | NA | other | upstream | 3672001 | 23800783 ~ 23801684 (-) |
