LOC110531713 (LOC106577639)


Basic Information

Item Value
gene id LOC110531713
gene name LOC106577639
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20219010 ~ 20238861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987539.1
CAGAGCGTGTTCTCATTTACTCCTCTCGAGACAGTCTCACAATCACTTAGCCCAGAGTGTTGCAGATAGGACATTAGAGCTATGGAGGTCTTCATGGAGGCAGCTGCCTACCTTGAGTCACAGCATATTCCAGTGGAGGCTGTAGGTGAGCCAAGTCCTGATCCACTGCAGGAGGATGTGTTCCCAGAGGAGGATTTGTTCTCCccccaccagacagacagcatggaCCTGCCCGACACCCCTGTCCTGCGTACCCCTGTAGAGATGCTGGATAGGAGGCTCATGGTGCTGAGAACTATCCTGGACAGTGAGAGGATCTACCTCAATGAGCTGGAGACACTGCtgatgCCTATGAAGGCTCTAAAGGCCACAGCAGGGACGTCTCAGCCGGTTCTGTCCAGCCAACAGGTCCAGACTGTGTTCTACCAGGTGCCTGAGCTCAGAGACCTGCACAGAGACTTCTACACTGGCCTGAGGGACCGCCTGGGGCACCTGGAGCCACAAGCACACCCAGAGACAGACAAGGGGCCCGGGCCAGGGCTGGGGTTGGagcagggggaggagaaagaacaAGGCCAAAGCGGCTACCAGCTAATGGTTGGAGACCTCTTCCTAAAGATTGTGAGCCAGCTAGGTGTGTATCGTGGATTCATTGATAACTATGAGAGTGCTGTTGAGATCGTGAGGAGGTGTACTCAGACTGACCAGCGCTTCAGGATACTGGCCGAGAGTATGATGTCTCATAATGGATCAGACAGAACTAAAACGAAATACACCTTTGAGGCTCTCCTGTACAAGCCTCTGGACAGAATCACCAAGACAACCCTAGTGCTGCATgACCTGTTGAAACACACTCCCCAGCAGCATAGTGACCACCCCATGCTGCAGGAGGTTCTGAGACTGTCCCGGGGCTTCCTGTCTGGGGTCAACGAGGGATCACAGTGCAAACGAGAGGTCACCCTCAGCAGAGGCATGCGGCGCCAGCTGATTCGTGACGGCTTTGTGGTggatgtgtgtgagggggggCGTAACCTTCGCCATCTCTTCCTGTACACTGACCTGCTGCTGTGCACCAAACTCAAGGGCGGTGCCCAAGGTAAGCAGCCCCAGTACAGGTTCTGTTGGTACCTGCCTCTGGCTGGACTGAAACTCCACTGGGGACCAGAGATGGAgctcaccacagacacacaccatcgCATACACGCCACGAGAGCCAAGATGTACCTGCTTAGACACGAGCTGCGACAGACAATGAAGCCTGTCCCACAGAAGTGCTTGGCAGCTCGTACTATAGAGCGAAGCAGATGGAAGAAGATGGAGCAGCTTGAACTGATGATTCtgacacactctcctctcctcccactggaACTACACAGCCCCAGCggaaagAGCCACACTCTGGTGATGTCATCTCTGTATGAactagaggagtggagagaggccATCCACAAACTCACCGGAGATAACAGAGAAATGGTTCCTCCAGACCTGCTCACCCTAACCAGCTCCTGTGTCAAACTGAGAATGACCCAACAGCCTCCCTTTCACAGCATACTGCCTGgtGAGGAACAGTCTCTATGTGGGACTCTTAGTGTAGCCGTTCACTCTGCCAGTGGACTACAACAGCCAGCCAgtgtgtatgtgtgtgtggaggtggatGGCTTTGAGTTCTATGAGAGCCAGGCCCAGACCCACTCCTCTGTCAGCAGCCTCAGCCCTCACTGGGACCAGGAGTTCTCCTTCCAGGTGGATGGGGCTCAGAACCTCAGGGTGCTGTGTGTGTTGCAgccagaggaaggagagagctGTGAGGACCGAGTCCTTTGCAAGACCTCTATACAGCTGGACCCAGGCCTCCTACAGAAGCGATGGAGGAGACAGACCCTCTCTCTAGGCCAGGTGGAGGTGACAATGTCTCTAAAGTACTGCCCTCATCCTCTAGACCCGCCCTGTCTGACCCCTGCCCAGCAACAGTCCATCTTCTGCATGCCCATTGGAGCTGTGGCACAACAAGAGGGTGTCCTGGTGCCACATGTGGTGCGTTGctgtgtggaggaggtggagcgGAGAGGACTGGAGGAGGTGGGCATCTATAGGCTATCAGCAGCAACCAGTGACATCACCAACCTCAAGACTGCTTTCAACACCAgtctgcgTGAGGCAGTGTCCAGGTTGAGGTGTGTAGATGTGAATGCTGTCTCAGGTATACTGAAGCTCTACTTCAGAGAACTCCCTGAACCTCTCATACCAACAGAACTGTTCCAGAGCTTCACCAAGGCGTTGGACATTCCAGACCTGAGCTCCAGGAGTGTGACCATGTTGTCTCTGCTCCAGTCCTGTCCCCCCGTCAACCAAAACACCTTCctgttcctcctccaccacctcaaAAGAgtgtcagacagacagcatgtGAACAAGATGCCTCTGATGAACCTGGCCACTGTGTTTGGTCCCAGTCTACTGCGCCCCCCTGTGGCTGTTCTGGGACAGTGCAGCCCGACAGTGGACATCTCTCAGGAGGTGGAAGTGCAGgtccaGGTTGTGTATTTCTATCTGCAGTGTGACAACCTGCCTGAAGCCCAGACATGCATATCACATGACACAGAGACCCCTGAGGAAGATGAGACCACCAACATATGAACCTTAAACTCCTGGAAACATCACTGTTGGCCAACAGAAActcaggaaaaagagagagaggggacatgtAATCTATAGACATTGTAAagataaataaatgtatttatttgtaaa

Function

NR:

description
PREDICTED: active breakpoint cluster region-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987539.1 True 2754 mRNA 0.54 22 20219010 20238861

Neighbor

gene id symbol gene type direction distance location
LOC110531711 LOC106577643 coding downstream 50424 20151667 ~ 20168586 (-)
fis1 LOC106577644 coding downstream 83506 20132002 ~ 20135504 (-)
LOC110531708 LOC106577645 coding downstream 90228 20106140 ~ 20128782 (-)
LOC110531707 LOC106577647 coding downstream 115923 20088107 ~ 20103087 (-)
LOC110531705 LOC106577649 coding downstream 139588 20076757 ~ 20079422 (-)
ponzr1 LOC106608771 coding upstream 8627 20247488 ~ 20254228 (-)
LOC110531717 LOC106577635 coding upstream 63190 20302051 ~ 20324316 (-)
si:ch73-335l21.2 LOC106577636 coding upstream 85556 20324417 ~ 20326689 (-)
si:ch73-335l21.1 LOC106577633 coding upstream 112542 20351403 ~ 20407410 (-)
agfg2 LOC106577632 coding upstream 171943 20410804 ~ 20421618 (-)
G780409 NA non-coding downstream 13890 20204839 ~ 20205120 (-)
G780407 NA non-coding downstream 15584 20203201 ~ 20203426 (-)
G780379 NA non-coding downstream 68832 20136510 ~ 20150178 (-)
G780374 NA non-coding downstream 99927 20118846 ~ 20119083 (-)
G780373 NA non-coding downstream 108225 20110578 ~ 20110785 (-)
G780515 NA non-coding upstream 119223 20358084 ~ 20358608 (-)
G780525 NA non-coding upstream 141238 20380099 ~ 20380659 (-)
G780537 NA non-coding upstream 169667 20408528 ~ 20408789 (-)
G780449 NA non-coding upstream 171734 20410595 ~ 20410683 (-)
LOC110531704 LOC106608762 other downstream 143558 20022194 ~ 20075490 (-)
G780209 NA other downstream 394439 19817691 ~ 19824571 (-)
G778216 NA other downstream 1860907 18355441 ~ 18358103 (-)
G776822 NA other downstream 2558527 17659690 ~ 17660483 (-)
G776820 NA other downstream 2559607 17659016 ~ 17659403 (-)
LOC110531730 adgrl3 other upstream 692099 20930960 ~ 21272646 (-)
G782003 NA other upstream 1536857 21775718 ~ 21776210 (-)
G784602 NA other upstream 3498360 23737221 ~ 23739513 (-)
G784652 NA other upstream 3561922 23800783 ~ 23801684 (-)

Expression

LOC110531713(LOC106577639) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110531713(LOC106577639) Expression in each Bioproject

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LOC110531713(LOC106577639) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network