LOC110532972 (LOC106577640)


Basic Information

Item Value
gene id LOC110532972
gene name LOC106577640
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20239757 ~ 20247172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987541.1
aattacattatgacatcacATAGTGAAGTTCTCTGTCTTGTAATTCTAGAATGGCTGGTTACAGTTACATTCAAAGGCCGATCATATAGATGTGTAGATCCGGTTTCCTTTTCCTCTCTATCCTCTGAGTATTTTCGGAGAATTTAGGAAAAGAGAATGTCGGACCAATCCAAATGCACCACCATCTATATGTCTCGGGAGTTGAGACAGGCCAGCGACAAGGCTCTATCGACAGGTGCTCAAGAGATACGCTTTCCAGACCATAAATCACCACCATCTCTTCGAATTGGTCAAATTCAGTCACACCATTTGAGTTTAGGAATCCGCCGCTCTTTCGCCTCCACGGACCTGCTCACCAATGCGCATCCGCATTCAGCACACAGTGCACTTTCCCTGGACAGCCTGGAGGGGGTGCTATCGCTACACTCAGACTCTAGAGTGGAGCTCCAGCCTACCAGTGACACCACCCTGAACCCCAGGAGCTCCCACAGCAGCCGGCTTTCCCTGGAGGCCATAGCGCTGCCTGCAGGTGGGGAGGGGAAGTGCAGCGACGGAAAAAAGAGTTTGGGCACGGAGCACGAGGAGAACTGGCAGGACGCCAGGGACGGCGCCAACGAGTTGCACCCTGAGGATGATGAGGATTCGGGGTCCCTTGAGTCCAtcgatgaggaagaggaggaggaaggcttAATGGTGGTAAACCTCAAAGCAAGTAAAGAGAAAAGGAAAAAGAGACATGATGTGGAGGGGACTTCAACTGAGAGCCCATCAAAGTACCTACAGGAATTCCATAGTTTACCCAAGAGGCTAGTGCCCTCTGAGATCACCCACTGTCTGTATGAACTAGAGGAGGAGTgcaggggagtggagagagagagcgacagtgtCAAATGGAAGATGGAGCTAATTCATCGCAGCGTGGTCACAGTCCAGGAAACACTGCGGACTCTTCTGAAACGCTTGGTGGAGGCTCAGAGCAACGAAGCCCTGGACCCAACCCCAATACCGACCAcccaccacctcctctccaccacccACCACCGCCCCCCTCACTcgccctctcactccctcttccaCTCCGCCAACCCTCTCTTGCTGGCAGACGCCCCCACCAAGATCCTTTCCACCTCCCAGGTGAACCAGGTGCCCTCCAACCTGTCCCAGTGTACACACCACCACTGCCTGACTCACCGTTCCGTGGCGCGCAGCCCATCCGAGACTTGCCTGACAGAGGCCAATGCCACCCTGACCCAGGGCCACTGCTGCCCCAGGACCACAAGCCCTGGAACCGCCACCCTGACCAGCTGTGCCCAGcgggggaaggagagggcagcAGCCCTCCATGCCATCACTGACCTGAGGATGGACGTAGAGCACCTGCGCGCGGCCTATGAGGAGGGGCGCCAGGAGCACCGGGAGACCCTGGGGGTGCTGAgggccttccagaaggacatggGTACCCTGGTGTCCcactggcagagagacagacaggacagacagaagcAGAATGACGTCGGCACACAGCTGGAGGCTATCAGACAGCAATCCAACAATGTCACTgagatgactcGGCAGGCAGTTGCTGTGTTCGGTAAAGTGGGGCTTCAATTGGAGGGTCTGGGAGCAGTAGGAACTCTGGTCCGCTCTGCCTCTACCAAGCTGACACCCAACAGctctcTACTGTGCCAGTGCTGCACTTCCAAGacaatggatggagagagcaaaGAAGACTGAGAGCAAACATATAGTATTGTCTTGATTGAAACCGTTGAAATAAAACGTTTATCTGGAAA

Function

NR:

description
uncharacterized protein LOC109906491

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987541.1 True 1793 mRNA 0.55 9 20239757 20247172

Neighbor

gene id symbol gene type direction distance location
LOC110531712 LOC106577641 coding upstream 28519 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 65807 20166595 ~ 20173950 (+)
LOC110531706 naa38 coding upstream 157673 20079382 ~ 20082084 (+)
LOC110531703 LOC106577651 coding upstream 219328 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 293235 19942675 ~ 19946522 (+)
LOC110531716 LOC106577637 coding downstream 32902 20280074 ~ 20282985 (+)
si:ch73-335l21.4 rn182 coding downstream 87331 20334503 ~ 20336164 (+)
LOC110531718 LOC106577634 coding downstream 89249 20336421 ~ 20341732 (+)
acap1 cenb1 coding downstream 171520 20418692 ~ 20455030 (+)
trip6 LOC106577628 coding downstream 284773 20531945 ~ 20539559 (+)
G779407 LOC106577639 non-coding upstream 16430 20219043 ~ 20223327 (+)
G779405 NA non-coding upstream 32474 20207061 ~ 20207283 (+)
G779404 NA non-coding upstream 32917 20206626 ~ 20206840 (+)
G779352 NA non-coding upstream 94922 20138277 ~ 20144835 (+)
G779351 NA non-coding upstream 101640 20135564 ~ 20138117 (+)
G779446 NA non-coding downstream 54583 20301755 ~ 20303563 (+)
G779465 NA non-coding downstream 77325 20324497 ~ 20325034 (+)
G779469 NA non-coding downstream 81076 20328248 ~ 20328472 (+)
G779478 NA non-coding downstream 91354 20338526 ~ 20352737 (+)
G779520 NA non-coding downstream 162043 20409215 ~ 20409877 (+)
G779291 chd3 other upstream 199474 20039611 ~ 20040283 (+)
LOC110531697 NA other upstream 347310 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 415151 19817663 ~ 19824606 (+)
G779964 NA other downstream 854407 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2796835 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2858299 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3518533 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3555414 23802151 ~ 23804811 (+)

Expression


Co-expression Network