XLOC_026630 (baxa)


Basic Information

Item Value
gene id XLOC_026630
gene name baxa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37776489 ~ 37785873 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051883
ATATTGTCGTCACGCGGCGGAAGCGTCTTCTTCAGTTCGCTTATTTTCATGCTAATATGGCAGCGCCGTCGGGTGGAGGCGATACGGGCAGTGGCAATGACCAGATACTTGACTTGGGAGCTGCACTTCTCAACAACTTTGTGTATGAGCGTGTTCGTCGGCATGGCGACAGGGATGCTGAAGTGACCCGGAGTCAGCTTGGGGGCGTGGAGCTGTGTGACCCCAGCCATAAACGCCTCGCGCAGTGTTTGCAGCAGATCGGAGATGAGCTGGATGGAAATGCGCAGCTGCAAAGCATGTTAAACAACTCTAATCTTCAGCCGACTCAAGATGTCTTCATCAGAGTGGCCCGTGAGATCTTCTCTGATGGCAAGTTCAACTGGGGAAGAGTTGTGGCGCTTTTCTACTTTGCCTGTCGCCTTGTCATCAAGGCTATTTCAACCAGGGTTCCTGACATCATCAGAACCATCATAAGCTGGACGATGTCCTACATTCAGGAGCACGTCATTAACTGGATCAGGGAACAGGGTGGATGGGACGGAATCCGCAGTTATTTTGGCACCCCCACCTGGCAGACAGTCGGAGTTTTCCTCGCTGGAGTTATCACCACAGCATTGGTGATTCGCAAAATGTGAAGTAGCAGGAAGGTGGATAGAGCGAGAGAAAAAAGAGAGTTAAGACGGTGAACAGAGGGTGAAACAGACCAGCAAAAGATTAACAGAAAGACGAGAGGGAAGAGAAAGAGTTGGAGACAAAAAGCATTGAGAGGTGAAACCGCCTCAACCCAATGAAAGAGGAGGAAAGAGTGAAAGTTCAGCCAGATGTAGATGGTTCAAGCCACTCTTTTTTTACTCCAGAGTCTGTGCCCTTTCTTGTTCAGCTTCAAATCTTGAATACATTTGCACTGAGAATGAGAGATTAATGCAAAAGCGTTTAGGTTTAGGCTTCATTTTaggtatttatttttagtttgggGCTAACTGGCTATCTAGAAAAGACTGTATCGGTATGTGATTTAATTTATTAGCATTATTTCAATTTCCGATTTAGGACTCGTATTCTGTTTATCTTTGTCAGACAATTGTGCATGCAGTCAAAATTCTATTTGATAAACATTTATGATGTTTGATcactaatatatatgtattttaacgGGAGGATCACACCATTTAAAAGAGAAGGAATGGCCTCGGCTGCATTCTGATGATATTTCTCCTCACTTCCTCTTCTTTCTTGGTTCACAGTCTCCACTGCAAGGGCTTCCAAATGTCTGTGAGTTGTATTTACAGGTACAAGATGAGCCTCTAAAGTTTATGAGGTGGCGTGGCAGCAGTTGAGCGCAGCAGCCAGCCAATCAGCACTCTGGCTGCAGTATGTGGGAGTGTCTTAGCAAGCTCTTCCTACAGCAGGGATGGACAAAACTAGTGacctaaaatcattttaaatttcacTGAGCCATGCTGATCTTTTTTTACACAACCAAATAATTTCATTGTTGAATAATGAAGGAACCAGTTGAACTTTCTAAAGAAGCAGATTCATTTCTCATCTGAGATTTGAAGAAACACCATTAGTTTGGCTGGAACTGGTGTAAAAGACGTGTAGTGTGTAAGGGTTAGTAAACCAGGCTTACAAACAGATGAGTTGAGCTCTTTCTCTCAGCATAGTCTTCTCAGTACTGTATTTTCACCATGGTTAGTCAGACCTATAATCTGAACTTTTTTATACACTTGTTTCTTTCTCTCTTGTTTGTTTGAATACAGTTTCATACTCTTTCTGTTTAGGATCTTTTCTTTTCGTTGACAGTGCCTTGGCCTTTTTATGATACTAGCCGCCACTTTTTCATCTTTTTCTACATCTTTGTAAAATGGTATGAATCGTGCACCCTAAGGTGGTCTACGTGCTGTGAGCCCATGAGTTTTTGTAAGATGTAcgattaaataataaattgttaaattgtttttatgGATTTCAGTATAAA
>TCONS_00051884
AGTTCGCTTATTTTCATGCTAATATGGCAGCGCCGTCGGGTGGAGGCGATACGGGCAGTGGCAATGACCAGATACTTGACTTGGGAGCTGCACTTCTCAACAAGTGAGTATTATTTTTATCTCCCCTTCTCATTTTCCGTGCTCtctgcatttgtttttgttcttgACCTCTGCCTCTTGCAGCTTTGTGTATGAGCGTGTTCGTCGGCATGGCGACAGGGATGCTGAAGTGACCCGGAGTCAGCTTGGGGGCGTGGAGCTGTGTGACCCCAGCCATAAACGCCTCGCGCAGTGTTTGCAGCAGATCGGAGATGAGCTGGATGGAAATGCGCAGCTGCAAAGCATGTTAAACAACTCTAATCTTCAGCCGACTCAAGATGTCTTCATCAGAGTGGCCCGTGAGATCTTCTCTGATGGCAAGTTCAACTGGGGAAGAGTTGTGGCGCTTTTCTACTTTGCCTGTCGCCTTGTCATCAAGGCTATTTCAACCAGGGTTCCTGACATCATCAGAACCATCATAAGCTGGACGATGTCCTACATTCAGGAGCACGTCATTAACTGGATCAGGGAACAGGGTGGATGGGACGGAATCCGCAGTTATTTTGGCACCCCCACCTGGCAGACAGTCGGAGTTTTCCTCGCTGGAGTTATCACCACAGCATTGGTGATTCGCAAA

Function

symbol description
baxa Predicted to enable channel activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within several processes, including positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; response to cadmium ion; and response to methylmercury. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Is expressed in several structures, including digestive system; female organism; heart; immune system; and male organism. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; ataxia telangiectasia; colon adenocarcinoma; and colorectal cancer. Orthologous to human BAX (BCL2 associated X, apoptosis regulator).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0001836 release of cytochrome c from mitochondria biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051597 response to methylmercury biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0015267 channel activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000511-6 Predicted to enable channel activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within several processes, including positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; response to cadmium ion; and response to methylmercury. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Is expressed in several structures, including digestive system; female organism; heart; immune system; and male organism. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; ataxia telangiectasia; colon adenocarcinoma; and colorectal cancer. Orthologous to human BAX (BCL2 associated X, apoptosis regulator).

Ensembl:

ensembl_id ENSDARG00000020623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051883 False 1981 mRNA 0.43 6 37776489 37785873
TCONS_00051884 True 676 lncRNA 0.51 5 37777841 37785840

Neighbor

gene id symbol gene type direction distance location
XLOC_026629 baxa coding downstream 2689 37766473 ~ 37773800 (-)
XLOC_026628 si:dkey-260c8.6 coding downstream 16493 37757385 ~ 37759996 (-)
XLOC_026627 gpatch8 coding downstream 76497 37662444 ~ 37699992 (-)
XLOC_026626 NA coding downstream 127100 37634100 ~ 37649389 (-)
XLOC_026624 arf2a coding downstream 187634 37558491 ~ 37588855 (-)
XLOC_026631 BX936420.1 coding upstream 740106 38525979 ~ 38529416 (-)
XLOC_026632 mpp3a coding upstream 862114 38647987 ~ 38692920 (-)
XLOC_026633 si:ch211-198m17.1 coding upstream 919552 38705425 ~ 38745598 (-)
XLOC_026634 znf281a coding upstream 977018 38762891 ~ 38783951 (-)
XLOC_026635 si:dkey-106c17.2 coding upstream 1126684 38912557 ~ 38918717 (-)
XLOC_026625 NA non-coding downstream 191682 37581522 ~ 37584807 (-)
XLOC_026621 CT573704.2 non-coding downstream 700676 37075698 ~ 37075813 (-)
XLOC_026619 NA non-coding downstream 804267 36969403 ~ 36972222 (-)
XLOC_026618 CT573704.1 non-coding downstream 808496 36967871 ~ 36967993 (-)
XLOC_026636 NA non-coding upstream 1185562 38971435 ~ 38975698 (-)
XLOC_026637 NA non-coding upstream 1326441 39112314 ~ 39113547 (-)
XLOC_026646 CU464118.1 non-coding upstream 1586000 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 1775911 39561784 ~ 39563301 (-)

Expression


Co-expression Network