si:ch73-335l21.4 (rn182)


Basic Information

Item Value
gene id si:ch73-335l21.4
gene name rn182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20334503 ~ 20336164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615050.2
GAAAGTCCCTCCCACACTAAGAAATATAAATATAGCCAATTAAGTCAGACAGTTCATTCTCGTTGAACGAAACAGCACCCAAAGAGAAAGGAAAATGTGTTCAGATCTTGAGTGCGGAATTTGTTACCGAAGCTACAACACCGGCCGTCGGTGTCCTCGTGAGTTACAGTGTAAACACAGCTTTTGTGAGCGCTGTCTGGTGACTCTTTCCCAATCCTCAGTATGTGAAGTGGAATCCACGAAGGAATGTTCGCCGCAGGACAAGACAATCGTTTGCCCACTCTGCCGATACCAGACCTCTGTATCGGGAAAAGTGAGGGCAGCGCTTCCGGTAGACGAAAGTGTTCTAGAGCGCATGGTGGTATCTGGCGTTCTCGGGGAAAGCATGACAGACGACGAGGGGGATAGCGAGGGGAAGGAGGATGACAATGAGACTCCCCATGAGAACTCAGCCGAGGAAAGGGGTTCCAGAGGTGGAAGGTTCCGCCGTTCGCTGAGGCGCGTCTGGGGCAAATTCACTGGGAATCATTCCCAAAGGAGAGCGCATTGTATGACTGATGATGACCTACGAGACCTCTTCATGATGTCATGCTATACCATTTGATGAGGACTTAATTGATTGGAAAGTCATCAGGGCTGCGTTCAGTACGTTTTTACGTTCTGGCACGTTCAGTTGAACGGATCCGGTGCTGTACTGAACGACCAGTTGAAAAACCGGGTTGGAGAAAGCTGTCGGCATGGCCACTGCCCTTTAAATATGTCACAcattgcttcaagccacacctCGCCACACCCACCAACGGGAGCCACCCTACCTCAGTCTGTTCAAGAACGTTTGGGGGGAAACGTGTCAATCGGTACAAACCGTTCCGTAACTTAGCAAACGTTCGAGCGAACTGAACGCACCTCAGTGGCACCTGATTGATCAGAGAGGGGGCGTTGCCGTCCACGAGCCTACACTACAGTAACCTATTTGGACTGTAGAAGACTGGCGGGTCCAGTTGGAAGTTGGAGCAAGCAGTAATATGTATTCCATATAATAGCCAACTAGGCCTCTGTGTCCATTTCTTCACACATGCATGTAATAATTGGTGGTGACCAAACACATAATGGTAACAGAATTGTAAAGACTATAGGCTATTCTTTGAAGCCATTGGGCTACTGAATGaaatagttttatctaaaattgtatttttttttgtgcttTGAAGTAGTGGCTTTCCATTTCCAACTATTAGAATGTGTTGAATTTTGTTGGTGCTCAGTTCAATATAAAACTAATTGACTGTAGTGTATTTATTACATTCACTTTTATTGATTGTGTGTGATATTTTGCACCTTTGTTTTGTAATAAAAcatgttattgttttgttaatttTCTTCTCTCGCCTGGATAAATGGCTTGCAGTAGTAACTGATGCTTGCTTTTTCGCTGAAGAATAAGTTAATAAATAATACTGTTCT

Function

NR:

description
RING finger protein 208-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615050.2 True 1464 mRNA 0.45 2 20334503 20336164

Neighbor

gene id symbol gene type direction distance location
LOC110531716 LOC106577637 coding upstream 51518 20280074 ~ 20282985 (+)
LOC110532972 LOC106577640 coding upstream 87331 20239757 ~ 20247172 (+)
LOC110531712 LOC106577641 coding upstream 123265 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 160553 20166595 ~ 20173950 (+)
LOC110531706 naa38 coding upstream 252419 20079382 ~ 20082084 (+)
LOC110531718 LOC106577634 coding downstream 257 20336421 ~ 20341732 (+)
acap1 cenb1 coding downstream 82528 20418692 ~ 20455030 (+)
trip6 LOC106577628 coding downstream 195781 20531945 ~ 20539559 (+)
LOC118936359 LOC106577628 coding downstream 204752 20540916 ~ 20550011 (+)
LOC110531733 LOC106577625 coding downstream 956537 21292701 ~ 21355731 (+)
G779469 NA non-coding upstream 6031 20328248 ~ 20328472 (+)
G779465 NA non-coding upstream 9469 20324497 ~ 20325034 (+)
G779446 NA non-coding upstream 30940 20301755 ~ 20303563 (+)
G779407 LOC106577639 non-coding upstream 111176 20219043 ~ 20223327 (+)
G779478 NA non-coding downstream 2362 20338526 ~ 20352737 (+)
G779520 NA non-coding downstream 73051 20409215 ~ 20409877 (+)
G779563 NA non-coding downstream 146333 20482497 ~ 20482703 (+)
G779574 NA non-coding downstream 159713 20495877 ~ 20496206 (+)
G779291 chd3 other upstream 294220 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 311035 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 442056 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 509897 19817663 ~ 19824606 (+)
G779964 NA other downstream 765415 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2707843 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2769307 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3429541 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3466422 23802151 ~ 23804811 (+)

Expression


Co-expression Network