LOC110531718 (LOC106577634)


Basic Information

Item Value
gene id LOC110531718
gene name LOC106577634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20336421 ~ 20341732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615049.2
ATATGTTTTAATCTGCACAATACATCCCAATTGAAAAATACTGTAATGTTGCACTCTTCTGAACTGGTCCTGAATTAGATGCACCTGTTGAGATAGCAACAGGCACATCTAATATGCTAATCAAGGGGCTCTGTGACCACAGTGTGCTATTTAACAACTAGAGGAGCAAGAGGTTGATAAAACAAGGCTTTTTTAAATTGATATTTTTACCTTGGACTCTTTTTCAGTTACAATCTACTACAATCTGATTGTGCTGTCGTGTATCATATGTTGGTTGCTGGCCAGCAATAATGACAAGGACTTTAAGACTTAATTCTAGGCTTCTGTTCCTGTGTCTGGTATTAGCCACTGTGGAAGTCAGCTCATGTTTATCAATGGGCAAGCGAGCAGTACACGAACAGAGAAGTTCTCTCGGTACACAGGGCCCAAGAAAATGGAGGACTTTCAACAACCCTTACACATTTAGCCAGAGCCATAGTCTTGGCCCAAGCCAACCGGTCCCCAGTAGTGTCCAACCTGACCAGGCTCAGATTGTCTTCAGGCTGAGACCGGGAGTCCAGACTGGGAGAGAAGGTTCCCCTGATGGTGAGGAGTCTTCGCCTTCCAACAGTCAATCTAACAGATTTTCAAGCAGCTCTGTGCCCAGTAAGACTGTCCATTTTCGTACCTACCCTTCTAGTGGCCTAGTTAGTCCAATTGTCCCCAAAACCTGGGGTGCCTCTGGTACTTTTCATTCAGTCTCAAACCCTATGATCCAAAGGAGCCATGGTTCGCAACCTGCCAGGGACACATTTGGCTCTCCTGTTGAAAACTACCCCATCCCAGCCCAACAGGCTGAAAACCCTGTGAGCAAGAATGAGAGATCCAAATACAGGACGTTTCTGTCTTCCTACCTCTTCAGGGAATCCCAATCCACTTCCAGCACCTCTGAAACCACTCACAAGGGCCCTAGTGAAGGAGTGAAGACGATTAGCAGACTTGGTGCTGCCTCTGCTACCCAAAGTGAAGGAAACTCCAGTGTTCATGAGTCTGGAAGATCCACACATGTCCAAAGGGGTTATGGCTACATAGGCTCTCAGTTGTACCCTACAACCATTAAGTCTGCCAATGGACAACAAGTGCACCCACCAACTCTGAGCCAATCCGGTTCTTCTAAAGTAGATGCTACCAGTGAAGCCCAACATGCTTCTAGTATCAACAAACCCTTCCATCACAGTGCTAACTTTGCTCAAAGTGGAGGTAGCCCTAGTAGCTATTTCCCTGGTGAAATGGCTGATACTCAGGCTAAAAGTGCTTTCAGCAAAATTCAACCTCTTATTAGATTTGGCTCTTTCTGGAACACAATGGCCCCCACTGCAACTCAACCCACCCAAAGTCCCTCTGAGCCTGCAGAGCGAGAAACTGCCCCTGACCAGTCTTTGAAAACCAGGAGTGGCTATGTCCTTTGGAAGAAACCTGGGCTAAGCAGCTCATCCAGTGGTCAGTACGCGTTAGCCACCGGTGGTTACAAACCTGGAAAATCCACAAATGTCAATACACTCGGAGGGTTCCAAGATCACGAGAAAACGTTGGCTCCCATCGTGAGTGACGATGACATACCCTCTGTTGCCATCAGAACTTCAGTCAACACAAACACTGTAAAGAGTCAGGGTACTGGCTGGAGAAATGGTCATGGTATACCTAGGGGCATGAGAATGAGTTCTGTCAGTGGGTATCCAGCTGTATACAGAAAGTATAGCTTTGCCCCTAGAATTCGAGTAGCTTCCACTACAACTTCCTCTGCCCAAAGCGATACTCTAGCcccaatgacattcaaatcaggtCCACGAGAAGTCCAACTTGCGTCCATAGAAGATGACCTTGTCACTAACAGCCTGCATGCCTCCAGCAATGTCCAGTCTTCAGAAGTGCAGACTACTACCACTGACATGTCTGGCTCTACCACGAGATCTGGTAGGCCTTGGTTTCTTAGATCTACACCTAGTGAGGATAACGAGGCTAAAATCGGCCATGTTTTCAAGGGATCCCAAACAACCCTACTACAATCTCCCCAGAGTGAGAGTCTAAAACATGTTCAGCCAACTTTTAGTCTGTCTGGCAACAATGTTTTCCATGACCGTTTGACTGCAGGAGAGGCTAAACCTGGTCCAACAAGCTCGGCCCCTTTCAAGCCTGAAGCTAGATTCAACATGTTTGGGTCTGTAATTTACAGACTGCCCAAAGGTTCCAGGTCCAAACAGAATGAATGTGTTCTGGGCATAAAGCTCCCAGGTGCAACTAGGCCCTCGGGCTGCAATGTATCTGCCCCTGCTGAAATCCAGCCCACCTCCATtaatttgacaacagccagtcagAGCCAAAATGTCCACAGTAAAGAAACTTCTCAAAGCAGTGACTCATTTCACAAAACTGTGAATCATTCTAGTTATGAAGACCCCAAGTCTCACCCACGTGACTCGGATAGAAATGAAATGACAAGCAATCCCTTTAGGTTCATATCTGGTAAACTCTCAAAAAGCCAGAATAGCTATGCTTTCATAGGCTTCCAAAAACCTATAAGCAAAGCAGGATCAACCCAGGACAAGGATGCTGATCTCTGTGCACAAACATTGCCTCCCATCAACAAAGAGCATCCACCCCCAGTTGTGCCCACCTCTGCCCCCAGTGTCCACCCAAGCCCTCCCAGAATCCAAGTTCAACCAGACCTAAGCATCACTGAACTCACAGAGAGTCGCAAACCCACCAGCAGCGTTGTAAAGGGCAGACGTGTGAAGGTGAAGCGCGTGCAGAGCCAACATAGTATTTCACCTTCGAACGACACCGCCTCCCAACCAGCCAAGCCCCAAACTATGAGGTTCAAGGCTATCCAATTTGCTGATATCCTAGGAAGTGCCTCTTTCAGTGGAATCCAACCCAGGGGAAGCTCCAGACCCAGTGTGCAGTCAACATCCAATACCCCAGCATCAGGTGAAGATGGCGGCGCACTGGACAAAGATCAACCAACACCGAGGGTTGGGGTCACCCCAAGGTGAAGGAGGGGACCCCAAGGCCTTACCATTCCCCAGTGCTGCTGCTCTGAGTAGAGAGGGGGATGTGGGTAGTGTCATATGGGCTGTTCAAAGTGGTAGGGGACTTTAGTAGTTTGGGAGCCATGAGGAAAGAACTTAACTAGTTGAGGGTGTCTGCAGATAATCTTTCCTTGAAGTCAGTCCGGTTTGAATTCATGAACGACGTGACCTTACCCCATAGCCCTGCTCTCAAGTATTTATTCACAACATGGTTGTGCTTGTAAATGTGATTTATAATAAATATTCatacttaaaaaaaa

Function

NR:

description
uncharacterized protein LOC110531718

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615049.2 True 3328 mRNA 0.47 3 20336421 20341732

Neighbor

gene id symbol gene type direction distance location
si:ch73-335l21.4 rn182 coding upstream 257 20334503 ~ 20336164 (+)
LOC110531716 LOC106577637 coding upstream 53436 20280074 ~ 20282985 (+)
LOC110532972 LOC106577640 coding upstream 89249 20239757 ~ 20247172 (+)
LOC110531712 LOC106577641 coding upstream 125183 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 162471 20166595 ~ 20173950 (+)
acap1 cenb1 coding downstream 76960 20418692 ~ 20455030 (+)
trip6 LOC106577628 coding downstream 190213 20531945 ~ 20539559 (+)
LOC118936359 LOC106577628 coding downstream 199184 20540916 ~ 20550011 (+)
LOC110531733 LOC106577625 coding downstream 950969 21292701 ~ 21355731 (+)
LOC118966017 NA coding downstream 1088635 21430367 ~ 21431314 (+)
G779469 NA non-coding upstream 7949 20328248 ~ 20328472 (+)
G779465 NA non-coding upstream 11387 20324497 ~ 20325034 (+)
G779446 NA non-coding upstream 32858 20301755 ~ 20303563 (+)
G779520 NA non-coding downstream 67483 20409215 ~ 20409877 (+)
G779563 NA non-coding downstream 140765 20482497 ~ 20482703 (+)
G779574 NA non-coding downstream 154145 20495877 ~ 20496206 (+)
G779576 NA non-coding downstream 155779 20497511 ~ 20497775 (+)
LOC110531706 naa38 other upstream 254367 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 296138 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 312953 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 443974 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 511815 19817663 ~ 19824606 (+)
G779964 NA other downstream 759847 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2702275 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2763739 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3423973 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3460854 23802151 ~ 23804811 (+)

Expression


Co-expression Network