trip6 (LOC106577628)


Basic Information

Item Value
gene id trip6
gene name LOC106577628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20531945 ~ 20539559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615069.2
ggactgggctgcataAGTAAGTCTGGAGATAATGATCCTCCACGCAGATCACTAGGCTAGGCCTGTGACAAACACGGGATCCATGAGAAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGTCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATATTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAAGGGACGTCACCTCTGACGAGA
>XM_021615067.2
CAAAAGGAACGAAACGGGGAGGGGCCGACAACGGTTTTTCCTTCAAAACGTTTTGCAAAAGAATtggcgtaatgaatacaccccaatAGAAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGTCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATATTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAAGGGACGTCACCTCTGACGAGA
>XM_021615066.2
CTAATTTTTATGAGCGAGTTTTATTCTACCCTATCTGAAAAACACATGAAATAAGTTCAATTGTTTAATTGCGCGTGTTTGTGTGCAACAAGTGTAGCGTTCTCTTTGTAGTAGGCTAATCGTGTAGCCTAGACGCTGTAGATCAGCTATCTCTTCAAACAAACATATCAAGTTAGGCTAATGTTGTAATTTTCTCTGTATTAATATCGCATGTTAACTTCAGTGTAACTTCCCGTTTGATATTCCTAGACTGACGCTGCATGATTTTTGTTGTTTAAATCCGAAAAATATTGTAATTTTCTGAACATAAATACTTttgtctactactaactaccctAAACATTTTCTTTGCCGCTCCAAAACTTGACAAAGCAATGTTTTTATCGTTTAGAAAGGTGCAATGCCATAGGCCTATACGATTTAGCATTGCATGTGATCTGGCTATTGACCCAAATAGCCTAATTGTCGCTACACTGTGACATGTTTTTCGTTTGTAGATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGTCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATATTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAAGGGACGTCACCTCTGACGAGA
>XM_021615068.2
CTAATTTTTATGAGCGAGTTTTATTCTACCCTATCTGAAAAACACATGAAATAAGTTCAATTGTTTAATTGCGCGTGTTTGTGTGCAACAAGTGTAGCGTTCTCTTTGTAGTAGGCTAATCGTGTAGCCTAGACGCTGTAGATCAGCTATCTCTTCAAACAAACATATCAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGTCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATATTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAAGGGACGTCACCTCTGACGAGA

Function

NR:

description
thyroid receptor-interacting protein 6-like

GO: NA

KEGG:

id description
K12792 TRIP6; thyroid receptor-interacting protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615069.2 False 1895 mRNA 0.59 11 20531945 20539559
XM_021615067.2 False 1897 mRNA 0.58 11 20532107 20539559
XM_021615066.2 False 2302 mRNA 0.54 10 20532205 20539559
XM_021615068.2 True 1976 mRNA 0.57 11 20532205 20539559

Neighbor

gene id symbol gene type direction distance location
acap1 cenb1 coding upstream 76976 20418692 ~ 20455030 (+)
LOC110531718 LOC106577634 coding upstream 190213 20336421 ~ 20341732 (+)
si:ch73-335l21.4 rn182 coding upstream 195781 20334503 ~ 20336164 (+)
LOC110531716 LOC106577637 coding upstream 248960 20280074 ~ 20282985 (+)
LOC110532972 LOC106577640 coding upstream 284773 20239757 ~ 20247172 (+)
LOC118936359 LOC106577628 coding downstream 1357 20540916 ~ 20550011 (+)
LOC110531733 LOC106577625 coding downstream 753142 21292701 ~ 21355731 (+)
LOC118966017 NA coding downstream 890808 21430367 ~ 21431314 (+)
LOC110531736 NA coding downstream 1055473 21595032 ~ 22190303 (+)
LOC118966179 NA coding downstream 2126817 22666376 ~ 22667896 (+)
G779599 NA non-coding upstream 7945 20523635 ~ 20524000 (+)
G779597 NA non-coding upstream 9067 20522439 ~ 20522878 (+)
G779596 NA non-coding upstream 9525 20522124 ~ 20522420 (+)
G779584 NA non-coding upstream 21331 20508432 ~ 20510614 (+)
G779576 NA non-coding upstream 34170 20497511 ~ 20497775 (+)
G779689 LOC106577627 non-coding downstream 129835 20669394 ~ 20681070 (+)
G779719 NA non-coding downstream 182038 20721597 ~ 20722248 (+)
G779724 LOC106577627 non-coding downstream 190526 20730085 ~ 20742513 (+)
G779846 NA non-coding downstream 332186 20871745 ~ 20871955 (+)
G779849 NA non-coding downstream 335465 20875024 ~ 20875470 (+)
LOC110531706 naa38 other upstream 449891 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 491662 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 508477 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 639498 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 707339 19817663 ~ 19824606 (+)
G779964 NA other downstream 562020 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2504448 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2565912 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3226146 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3263027 23802151 ~ 23804811 (+)

Expression


Co-expression Network