LOC118936359 (LOC106577628)


Basic Information

Item Value
gene id LOC118936359
gene name LOC106577628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20540916 ~ 20550011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987554.1
gaatacaccccaatAGAAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGCCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATACTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAGGGGACGTCACCTCTGACCCCACAATCCTTCCATTACTTTCCCCTGCTCTGAGGTAGAAGTTGCCCTAACGAATATATCTGAGACCAGTTTCACCCCTCTCCAAATCATAACCTTAACCACAAGGGGGAAATGTTAAACTAAGGGCAACTTTGTCCTTCTCTACTTTTTCATACTCTTCTAGTCAATCTTCGTTCTTCAGATGCCCAAAGCTGTGGAATCAGTAGTACCACGTCACCTCAAACTGCCTATGACAGTCTTCAATATGATGCCATTATTTAATTTCACTTGACTAGGTTTATTGATACATAATTACAGGTTAAAGACAGGGTATTGTAACATGGATTGACAACAAGTTCCACCACTATTCCCTAATCCTTGTCCTCTGGTTTATACTAGCTATCACCTATCCTCTATATTGTATCCTGTACCCCTACTCCCTATCTACTacaccctatcccctaccctTCAGCGCATACCAGTATTGTATAGAGCCTCTGACCTGCAGGCAGCAGGGGCTGCActaacccccctcccccttccccaccCACTGCTTATGTCACACTAATCCTGCATGTCCTACACTATGTCTTACACTCTATCCTGCCAGACATAGAGGGGACATGGAAGGAGCTCTATAATGGCAAATAATGATTGATGGATATCGGATAGGAATATTAGGTGGTGATGATGATTGAGGAAGACTATATCTTTCTGCCATCTGACCAGTCCAGAtaatggaacatatatatattttgtatgcCACTAAAGTCAATAAAAAACGCTGAACTGCCTCGCATGAAAAAAACGCACATATGCAAATGATATGTGAGACAGAGCATATGTTGCGGGTTGATTTGGTTATGGAGTGAATGGGTTTGCATACGTTTCATAGGAGAAGAAGTAGCTGTAGTTGGATTGATTTGTGAATAGAATAGAGGACACAGAAAGATTAGGTAGTCATAAAAAGCAGATCGCTAAAGTCAATGCTGTGACCCTATTTAATGTTGAAACAGTCCGTTTGTGTCAAGATGATAACTTGGCAGCTGACATGTTTGCCTTGTCAAAACAGAACAGCGATTTGCATCATGATAATTGGTACTGCATTTCCGAGAATGTTACTTGTAAGCCAGCCAAAACTCCAAACCCCATCTTCAAAATTTGAATGCGCTTTTTATTACTATAATATCATTTCTCTTAACATTTGTGTTGATTTATACTTGACTGTTAcaatggtgaagaaggtgcaatgAAGTCTAATGCAATTGTCTTACTGAGAAACAGGGATCTCATCCTCTTGTGTTCTTTATGGGTTTTTGTTTTAGCTTAAGAGTTAGATTTGCGTCGCTAATCCATATCCTCATGGCACTAGCGGCCATGTTGAAGCATCTATGAGACATTGGAGTCCTTCTCACATTGTTTTGATGTCATTTGTCGTTGTGTTTCGCCGTCCCGCGGTCTTAATTTGTTTTGCAACGTAAAAGCGGCTCGTATGATTTTCATTTCACACGCCTTCAAAACCCaaatctgtgtttgtgtctggaaTCACAGTACTTGATCCTTTTCCCTCAGTATTTGTCTCTGCGCACAAAGATATGAAGATCTCTGTGTGAGCCCTGTGAGTTGCATTTTCCACTTTTGCGTATTTATTTCAACTCCTGTTATACACTCATTGTTTCTAAGTCTGTGTTTATGGTCGTCACTGCGTGTAAATGT
>XM_036987553.1
tacaccccaatAGAAAGTAGGCCTAATTTTTATGAGCGAGTTTTATTCTACCCTATCTGAAAAACACATGAAATAAGTTCAATTGTTTAATTGCGCGTGTTTGTGTGCAACAAGTGTAGCGTTCTCTTTGTAGTAGGCTAATCGTGTAGCCTAGACGCTGTAGATCAGCTATCTCTTCAAACAAACATATCAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGCCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATACTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAGGGGACGTCACCTCTGACCCCACAATCCTTCCATTACTTTCCCCTGCTCTGAGGTAGAAGTTGCCCTAACGAATATATCTGAGACCAGTTTCACCCCTCTCCAAATCATAACCTTAACCACAAGGGGGAAATGTTAAACTAAGGGCAACTTTGTCCTTCTCTACTTTTTCATACTCTTCTAGTCAATCTTCGTTCTTCAGATGCCCAAAGCTGTGGAATCAGTAGTACCACGTCACCTCAAACTGCCTATGACAGTCTTCAATATGATGCCATTATTTAATTTCACTTGACTAGGTTTATTGATACATAATTACAGGTTAAAGACAGGGTATTGTAACATGGATTGACAACAAGTTCCACCACTATTCCCTAATCCTTGTCCTCTGGTTTATACTAGCTATCACCTATCCTCTATATTGTATCCTGTACCCCTACTCCCTATCTACTacaccctatcccctaccctTCAGCGCATACCAGTATTGTATAGAGCCTCTGACCTGCAGGCAGCAGGGGCTGCActaacccccctcccccttccccaccCACTGCTTATGTCACACTAATCCTGCATGTCCTACACTATGTCTTACACTCTATCCTGCCAGACATAGAGGGGACATGGAAGGAGCTCTATAATGGCAAATAATGATTGATGGATATCGGATAGGAATATTAGGTGGTGATGATGATTGAGGAAGACTATATCTTTCTGCCATCTGACCAGTCCAGAtaatggaacatatatatattttgtatgcCACTAAAGTCAATAAAAAACGCTGAACTGCCTCGCATGAAAAAAACGCACATATGCAAATGATATGTGAGACAGAGCATATGTTGCGGGTTGATTTGGTTATGGAGTGAATGGGTTTGCATACGTTTCATAGGAGAAGAAGTAGCTGTAGTTGGATTGATTTGTGAATAGAATAGAGGACACAGAAAGATTAGGTAGTCATAAAAAGCAGATCGCTAAAGTCAATGCTGTGACCCTATTTAATGTTGAAACAGTCCGTTTGTGTCAAGATGATAACTTGGCAGCTGACATGTTTGCCTTGTCAAAACAGAACAGCGATTTGCATCATGATAATTGGTACTGCATTTCCGAGAATGTTACTTGTAAGCCAGCCAAAACTCCAAACCCCATCTTCAAAATTTGAATGCGCTTTTTATTACTATAATATCATTTCTCTTAACATTTGTGTTGATTTATACTTGACTGTTAcaatggtgaagaaggtgcaatgAAGTCTAATGCAATTGTCTTACTGAGAAACAGGGATCTCATCCTCTTGTGTTCTTTATGGGTTTTTGTTTTAGCTTAAGAGTTAGATTTGCGTCGCTAATCCATATCCTCATGGCACTAGCGGCCATGTTGAAGCATCTATGAGACATTGGAGTCCTTCTCACATTGTTTTGATGTCATTTGTCGTTGTGTTTCGCCGTCCCGCGGTCTTAATTTGTTTTGCAACGTAAAAGCGGCTCGTATGATTTTCATTTCACACGCCTTCAAAACCCaaatctgtgtttgtgtctggaaTCACAGTACTTGATCCTTTTCCCTCAGTATTTGTCTCTGCGCACAAAGATATGAAGATCTCTGTGTGAGCCCTGTGAGTTGCATTTTCCACTTTTGCGTATTTATTTCAACTCCTGTTATACACTCATTGTTTCTAAGTCTGTGTTTATGGTCGTCACTGCGTGTAAATGT

Function

NR:

description
thyroid receptor-interacting protein 6-like

GO: NA

KEGG:

id description
K12792 TRIP6; thyroid receptor-interacting protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987554.1 False 3516 mRNA 0.50 11 20540916 20550011
XM_036987553.1 True 3690 mRNA 0.50 11 20540919 20550011

Neighbor

gene id symbol gene type direction distance location
trip6 LOC106577628 coding upstream 1357 20531945 ~ 20539559 (+)
acap1 cenb1 coding upstream 85947 20418692 ~ 20455030 (+)
LOC110531718 LOC106577634 coding upstream 199184 20336421 ~ 20341732 (+)
si:ch73-335l21.4 rn182 coding upstream 204752 20334503 ~ 20336164 (+)
LOC110531716 LOC106577637 coding upstream 257931 20280074 ~ 20282985 (+)
LOC110531733 LOC106577625 coding downstream 742690 21292701 ~ 21355731 (+)
LOC118966017 NA coding downstream 880356 21430367 ~ 21431314 (+)
LOC110531736 NA coding downstream 1045021 21595032 ~ 22190303 (+)
LOC118966179 NA coding downstream 2116365 22666376 ~ 22667896 (+)
sec24d LOC106577619 coding downstream 2178088 22728099 ~ 22756998 (+)
G779599 NA non-coding upstream 16916 20523635 ~ 20524000 (+)
G779597 NA non-coding upstream 18038 20522439 ~ 20522878 (+)
G779596 NA non-coding upstream 18496 20522124 ~ 20522420 (+)
G779584 NA non-coding upstream 30302 20508432 ~ 20510614 (+)
G779576 NA non-coding upstream 43141 20497511 ~ 20497775 (+)
G779689 LOC106577627 non-coding downstream 119383 20669394 ~ 20681070 (+)
G779719 NA non-coding downstream 171586 20721597 ~ 20722248 (+)
G779724 LOC106577627 non-coding downstream 180074 20730085 ~ 20742513 (+)
G779846 NA non-coding downstream 321734 20871745 ~ 20871955 (+)
G779849 NA non-coding downstream 325013 20875024 ~ 20875470 (+)
LOC110531706 naa38 other upstream 458862 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 500633 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 517448 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 648469 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 716310 19817663 ~ 19824606 (+)
G779964 NA other downstream 551568 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2493996 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2555460 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3215694 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3252575 23802151 ~ 23804811 (+)

Expression


Co-expression Network