sst5 (LOC106577629)


Basic Information

Item Value
gene id sst5
gene name LOC106577629
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20550368 ~ 20555011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615070.2
caaagttcatccttgatgaaatcctgctccagtgcgttcaggacctcagactggggcaacaaGACAACAATCCTAACAGAGCCGTCCTGtaggagtctctgaatgtccttgagtagcccagccagagccagagcccGAACCTGATCGAACCTGAtcggacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatataggggagcttgtagtgtcatacgaCTGGCGACTGTAAttgaggtgcttcaacaatgtactgagtaaatttgcaacaatttcaaaaaatCTGATTTTGGGTGTCCCttgagggaaaaaaacgatttaattaattttagaataatgctgtaacgtggaaaaagtcaaggtctggatactttcagaatgcactgttaGAAGGAAAGTATTGTTGGCCTACTTAGTATGACATACAATATATTGATTTGCATGCAACAATCAAATGAATGAATCAATAGTAAGTAAATATTCATTATATTAATATAGTCAAGTAAGTAAATATTGTGCTATATCAATGACCCCAAAGGTATTGTTGACAAGATTATCACGTGTGATGTGAGTTCAGATCATGTTGCTGTTGTTATTTACTTTCCAGATGAAGACCTGTTGCTCTCTAAACTGCCATTTAATATACACAAAAATGATGAGAGCAGGAGAGCCATACAGTAAACAGTACACTAGATGGCAGCAAAGCGACCACTAAGACCCGACAGGAATGATGAGAAATGAATATCTACACTGTAGGCTACTGCACTGTACTATCAGAAATAGTGGAGTCCTACAGCCCCAATATAGGAAAATACAATTGTATATCTTAATTGTTATTCCTATGTCAAAAACTCATGGGCTATTTGTAGAGACATGATAGCCGTGGTAtaatggccatataccacacccccttgggccatattgcttaattataaccTGATTATTAACACTTCAAACCAAAGCCTAGGCGACTCCAAAACAACCCTTCAGGTCTCAGccaaggttactcatcacacaAGTGTGGTCAGTCACACCAACACCTATAGAAGGCGTCTCCACGGACCTGTTCAGGTGGATGTAATAACATAGAATGTTCAGGTAGAAATGTATTGTGGGTTGTATTGTGGGTTGAAGACAGGTGGGTTATGATGAGGACTGGAGGTGGTGGCAGTACTGTAAGGACCCCACACGGGCTGTATtaatgtgcccagtgggatgcctGTGGCCATGACATCCCCCATCTCCTTCGGAAATGTTAATGAGGGCCGGAGGTGACATGAAGAAATGAGTAATCAGAACAAACAGTGCATCTCCCATGGTGCCAAGGGGCAACGCCGTCAGGAAAGGTTAGACTTCCTTCGTTCAGTGAGGTATCCGTCTTTGCTACCAGCTATTGCTAATAATGTTTCCTACAGTGGGGTTTTATGAAATTGAATTTCCCATTCATCCTCAAAGAAGTCAACAAAATCAATTCTGACGTACCACTCCAACCAGGCCAACTGTTGACAGTTGAAATCATGAATAACATGGCccagtagagtagaatagtgtAAAGTCTGGGACATTTGAGTTGTCAAACCAGTAGTTCACAGCAGCTCACACTTTAAccacaaacaaaaacaaatatagaAATAAATAATGTCCCAcatttagggctctattcagtctttaaagctgaagcgttacagattccgCTGTAATTTACGATTGAGCCGACGTGCAGCATTCTCTGTGAAGCCAGTCTCTGCTTCAAGAGGGAACATTGCCTTTTTAACTTGAATCACGCAGTAAGGCTAAACTTCCGCGATGCGGATTGAACAGAGTCGccaggctgcgtttacacaagcagcccaattctgatctttttttcggTTAATTGCTCTTTTGTCCAATTAGATCTGAAAAACACCTGATGTGAAAAaatgatgtgattggtcaaaataccaattagtggaaaaaatatctgaattggtcagtctgtgtaaacgcagcctcaATACGCACTTACATCTTTGCCCTTTGGCTGATAAATTAATGCTTACTTCTTCTGGGTACATGATGGGGGTTGGGAGAAGAAGATGGAGATTAGGGGGGGGACAGTGGGCAAACCTTCCAATTAACATTTGAGTCACTCCATATCATTAGCAGCTCTGTGTGGCGCATTAGGACCACACATCGTGCCGGAGACGCACCAGGGCTGGTGGGGCTAATCTCAACTGACGCAACACCCCTGGGCCTGGCTGAGACAGACGTCACCCTCCGTCAACACTAGACTGtgaatgagtcccaaatggcaccctattctactCCCAAAAGAGTGCTATTTCAGacgggtcctggtcaaaagtagtgcactatacagggaataggatgccatttcagagCACACTATCATCATCACTGGGCTCGGGGTTTGTTTAGATCTGAAATGCCGCTTGTAATGTTGTTGTTTGCCATGCCCACTTCACACTTGTCAATTCCATGTCACAACTTTGCAGATATTGGATGTTGGACAGATGTATAATATTGTTTTGTTCTTGTGACTGTGTCAAACCTCTGTGACCTTCTTTACTTCTTCCCTACAGCTAGTGACCCCcatgacacgcgcacacacacacgcacacgtccTCATCAACCAATCACATCCCTGTATTGGTACGAGGAAGAGCCAAGGATGAAGAAACCTATATATTGGTGGCGCCACTATTACGTGACACTTCGacagggctgtgttttgtgtgtggacCAACGTCCACATTCCTTCTTTGACATCCAGCCGTTGTTTTGTTTTCCAATAGGATAGTTATTGTTGAACATCCAGTCAACATCCAGATTATCGCTGCTGAATACAACATTGAAGGATACATTCGTTATACAGTTTAACCAATAGGAAAGGTACAGACAGGGGAGATGCTGTGTTCCCAGCTGCAGGTGTTACTGGTGGCTCTATCTGCCTCAGTGTTCCTGGCGAGGGTCAGCGCCGCTCCACACAGAGACATGCTAGCTGAACTACTGAGAGCAGATTCAACCAAGGGCAACGAGGATCTCTCCCGCACCCTCCTGCTGAAGATGATGTCGGACCTGATGAGCACAGCCGTGGGGGAGAACGAGGTCCTACCGGACCTGGAGGAGGCACTCGGGGTGAGGGAGGAGGTGGTGCGCCAGCTACCCCTCTCCCATCGGGAACGCAAGGCTGGATGCCGGAACTTCTTTTGGAAGACATTCACATCGTGTTAACTTGCCAAGCAGCCTCTTCTTTGTGCTGGATCATTTGAAGACATATTTCTTGCAATGTCACAAATGTAAAATGACAGCTACTTTTCCTTTTGCACTGTTCATGATCAATTAAAAGGTCTAGAATGATGTTGGCAAGTACCGGATATGTCTTTTTCAAGGGTTGGTTGTCTAGCAACAAAAGCAACCCGTGCACAACTATGGGGCAAGCTTAGAATGTTGACATGTAAGCTATATTTCGCCTTTactgaaaacaaatacatttgtatAATGAGTACTTGTCTCTTAAATACAATCAGTACAGTTGTTGGTTCGCTAGCTAGCGCAATATTGGCATGAAATCAGTCAAGACATGGTATCAAACACAAGCCACATGGCAGGTTCTTTACATTCTTGCTAGCAGCCATCCATATTCACAACAACGCGCACATCGTTTTTGTAacgttgtcagctaacccatctataACACCGAATAGGTTTTAGGTTAGGGTCTAGTACAGGGGTATATGAAAAGATGACAAGGTGTAGTTTGCTGAAAAATAGGGATGGTTTATTGTATTGATTATGTACTACA
>TU889203
ATATTAATATAGTCAAGTAAGTAAATATTGTGCTATATCAATGACCCCAAAGGTATTGTTGACAAGATTATCACGTGTGATGTGAGTTCAGATCATGTTGCTGTTGTTATTTACTTTCCAGATGAAGACCTGTTGCTCTCTAAACTGCCATTTAATATACACAAAAATGATGAGAGCAGGAGAGCCATACAGTAAACAGTACACTAGATGGCAGCAAAGCGACCACTAAGACCCGACAGGAATGATGAGAAATGAATATCTACACTGTAGGCTACTGCACTGTACTATCAGAAATAGTGGAGTCCTACAGCCCCAATATAGGAAAATACAATTGTATATCTTAATTGTTATTCCTATGTCAAAAACTCATGGGCTATTTGTAGAGACATGATAGCCGTGGTAtaatggccatataccacacccccttgggccatattgcttaattataaccTGTCTCCACGGACCTGTTCAGGTGGATGTAATAACATAGAATGTTCAGGTAGAAATGTATTGTGGGTTGTATTGTGGGTTGAAGACAGGTGGGTTATGATGAGGACTGGAGGTGGTGGCAGTACTGTAAGGACCCCACACGGGCTGTATtaatgtgcccagtgggatgcctGTGGCCATGACATCCCCCATCTCCTTCGGAAATGTTAATGAGGGCCGGAGGTGACATGAAGAAATGAGTAATCAGAACAAACAGTGCATCTCCCATGGTGCCAAGGGGCAACGCCGTCAGGAAAGGTTAGACTTCCTTCGTTCAGTGAGGTATCCGTCTTTGCTACCAGCTATTGCTAATAATGTTTCCTACAGTGGGGTTTTATGAAATTGAATTTCCCATTCATCCTCAAAGAAGTCAACAAAATCAATTCTGACGTACCACTCCAACCAGGCCAACTGTTGACAGTTGAAATCATGAATAACATGGCccagtagagtagaatagtgtAAAGTCTGGGACATTTGAGTTGTCAAACCAGTAGTTCACAGCAGCTCACACTTTAAccacaaacaaaaacaaatatagaAATAAATAATGTCCCAcatttagggctctattcagtctttaaagctgaagcgttacagattccgCTGTAATTTACGATTGAGCCGACGTGCAGCATTCTCTGTGAAGCCAGTCTCTGCTTCAAGAGGGAACATTGCCTTTTTAACTTGAATCACGC

Function

NR:

description
PREDICTED: somatostatin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615070.2 False 3822 mRNA 0.44 2 20550368 20555011
TU889203 True 1187 lncRNA 0.42 2 20553212 20554511
Loading

Neighbor

gene id symbol gene type direction distance location
bcl6b LOC106577630 coding downstream 27591 20508426 ~ 20522777 (-)
slc16a13 slc16a13 coding downstream 44709 20461795 ~ 20505659 (-)
agfg2 LOC106577632 coding downstream 128750 20410804 ~ 20421618 (-)
si:ch73-335l21.1 LOC106577633 coding downstream 142958 20351403 ~ 20407410 (-)
si:ch73-335l21.2 LOC106577636 coding downstream 223871 20324417 ~ 20326689 (-)
LOC110531729 LOC106577627 coding upstream 78231 20633242 ~ 20860765 (-)
LOC110531730 adgrl3 coding upstream 376033 20930960 ~ 21272646 (-)
LOC110531734 LOC106577624 coding upstream 850918 21405929 ~ 21414442 (-)
LOC110531735 tyrp-1 coding upstream 860196 21415207 ~ 21428695 (-)
LOC110531744 LOC106577622 coding upstream 2007966 22562977 ~ 22627895 (-)
G780572 NA non-coding downstream 6174 20535206 ~ 20544194 (-)
G780569 NA non-coding downstream 18698 20531216 ~ 20531670 (-)
G780446 NA non-coding downstream 24303 20525008 ~ 20526065 (-)
G780561 NA non-coding downstream 59880 20490269 ~ 20490488 (-)
G780559 NA non-coding downstream 64733 20485358 ~ 20485635 (-)
G780448 NA non-coding upstream 6945 20561956 ~ 20609427 (-)
G780643 NA non-coding upstream 81777 20636788 ~ 20641712 (-)
G780644 NA non-coding upstream 83563 20638574 ~ 20639309 (-)
G780747 NA non-coding upstream 269203 20824214 ~ 20826519 (-)
G780771 NA non-coding upstream 312984 20867995 ~ 20868340 (-)
LOC110531717 LOC106577635 other downstream 246988 20302051 ~ 20324316 (-)
LOC110531704 LOC106608762 other downstream 474916 20022194 ~ 20075490 (-)
G780209 NA other downstream 725797 19817691 ~ 19824571 (-)
G778216 NA other downstream 2192265 18355441 ~ 18358103 (-)
G776822 NA other downstream 2889885 17659690 ~ 17660483 (-)
G782003 NA other upstream 1220707 21775718 ~ 21776210 (-)
G784602 NA other upstream 3182210 23737221 ~ 23739513 (-)
G784652 NA other upstream 3245772 23800783 ~ 23801684 (-)
G784651 NA other upstream 3251547 23806558 ~ 23808272 (-)

Expression

sst5(LOC106577629) Expression in all Baseline Samples

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sst5(LOC106577629) Expression in each Bioproject

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sst5(LOC106577629) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network