Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118966017 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 21430367 ~ 21431314 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005053206.1 | False | 527 | mRNA | 0.44 | 2 | 21430367 | 21431314 |
| TU890002 | True | 451 | lncRNA | 0.45 | 2 | 21430383 | 21431254 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531733 | LOC106577625 | coding | upstream | 74636 | 21292701 ~ 21355731 (+) |
| LOC118936359 | LOC106577628 | coding | upstream | 880356 | 20540916 ~ 20550011 (+) |
| trip6 | LOC106577628 | coding | upstream | 890808 | 20531945 ~ 20539559 (+) |
| acap1 | cenb1 | coding | upstream | 975398 | 20418692 ~ 20455030 (+) |
| LOC110531718 | LOC106577634 | coding | upstream | 1088635 | 20336421 ~ 20341732 (+) |
| LOC110531736 | NA | coding | downstream | 163718 | 21595032 ~ 22190303 (+) |
| LOC118966179 | NA | coding | downstream | 1235062 | 22666376 ~ 22667896 (+) |
| sec24d | LOC106577619 | coding | downstream | 1296785 | 22728099 ~ 22756998 (+) |
| LOC110531753 | LOC106577617 | coding | downstream | 1579371 | 23010685 ~ 23011526 (+) |
| gba3 | LOC106577614 | coding | downstream | 1673859 | 23105173 ~ 23111380 (+) |
| G781180 | NA | non-coding | upstream | 25990 | 21404095 ~ 21404377 (+) |
| G781177 | NA | non-coding | upstream | 29619 | 21400490 ~ 21400748 (+) |
| G781176 | NA | non-coding | upstream | 31993 | 21398151 ~ 21398374 (+) |
| G781172 | NA | non-coding | upstream | 37314 | 21392754 ~ 21393053 (+) |
| G781162 | NA | non-coding | upstream | 45542 | 21384502 ~ 21384825 (+) |
| G781402 | NA | non-coding | downstream | 119988 | 21551302 ~ 21551502 (+) |
| G781438 | NA | non-coding | downstream | 142321 | 21573635 ~ 21574007 (+) |
| G781447 | NA | non-coding | downstream | 153581 | 21584895 ~ 21585140 (+) |
| G781555 | NA | non-coding | downstream | 305170 | 21736484 ~ 21736985 (+) |
| G781591 | NA | non-coding | downstream | 358477 | 21789791 ~ 21797313 (+) |
| G779964 | NA | other | upstream | 328096 | 21101579 ~ 21102271 (+) |
| LOC110531706 | naa38 | other | upstream | 1348313 | 20079382 ~ 20082084 (+) |
| G779291 | chd3 | other | upstream | 1390084 | 20039611 ~ 20040283 (+) |
| LOC110531703 | LOC106577651 | other | upstream | 1406899 | 20009183 ~ 20090543 (+) |
| LOC110531697 | NA | other | upstream | 1537920 | 19876221 ~ 19914138 (+) |
| G783405 | LOC106577615 | other | downstream | 1612693 | 23044007 ~ 23067530 (+) |
| LOC110531760 | LOC106577603 | other | downstream | 2334391 | 23765275 ~ 23780276 (+) |
| LOC110531761 | LOC106577604 | other | downstream | 2371272 | 23802151 ~ 23804811 (+) |
| LOC110531763 | LOC106577738 | other | downstream | 2402850 | 23834071 ~ 23839257 (+) |
