LOC118966179


Basic Information

Item Value
gene id LOC118966179
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 22666376 ~ 22667896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053443.1
GCAAACCTTATTTCTACCTTATCTACTCCAGAAGCAATGGGTGTGCCTGAGTCttatcacctctcaactagTTGAAGTTTAATTTGTTGACTGATGCCAAGGCAGCGGCTGCTTAGAAGGGGGCAGCTGCAGACCAGAAGACTGCAGCCAAGGCAGCCGCGGTCCACACCTGCCCTGTCTGTCGGACGCAAACCCAAAAACATTCAAGCAGCATTTTGAAAGCAAGCATCCCAAGTCTCCAATGGTCCCAGTACTGGTTGATGTGCAGGCCTAAGTGACCAAACAAACTCAAATGGACCTACAGCTGGGGTAAGACTATTCCATCATTCACACACAGTGTGAACCACCATGTTGTCAACAAAATACTGTTGTCATTGCTTAAATTCTAAAGTGTATGACTCAATTTATGGAAATGCTGTGATCACTTTTTGTCTTTAAAGTTGTGATTCACAGACACACGATGACCACGATTTTAATGCTGCAACTGATAGGGAAAGAATGCAGGAACACACGCTGAGACCCCGAGTATGACTGGACATGGAATTGATATTTgagacaataacctaaaagggGTGCAGAAGTACACCAGCACACCATTTTATGTTTAATCCATGGCCAACCATCCCTCTAGCTACTACTTATTCCACACTATATTTTATGCCCCATGGTCCCTCAACTTTGGACATTTTGGAACCTACACTTATTTTCCCTATGCTGCTTCCTTCACTTGTTCTTCTCCTGATTTGATCACTTCTAGACAGAGTAAAACATTTCAAAGTATTGTGGTCTACTGTTTTTGCCACCTTTTtatcacctgtgtaatgatgtccTCCTGCTGCATATTCTGGGGGTTCAGTTCAGACTGAATGCAGTGTTAAATGTGCTGCTCACAATTGACAGCAGCAACATGGGATATTTGAATTGACAAGAAGgatgttgatatacagtgccttgagaaagtaattacaccccttgaccttttccatatgttgtgttacagcctgaattaaaatggat
>XR_005053444.1
GCAAACCTTATTTCTACCTTATCTACTCCAGAAGCAATGGGTGTGCCTGAGTCttatcacctctcaactagTTGAAGTTTAATTTGTTGACTGATGCCAAGGCAGCGGCTGCTTAGAAGGGGGCAGCTGCAGACCAGAAGACTGCAGCCAAGGCAGCCGCGGTCCACACCTGCCCTGTCTGTCGGACGCAAACCCAAAAACATTCAAGCAGCATTTTGAAAGCAAGCATCCCAAGTCTCCAATGGTCCCAGTACTGGTTGATGTGCAGGCCTAAGTGACCAAACAAACTCAAATGGACCTACAGCTGGGTTGTGATTCACAGACACACGATGACCACGATTTTAATGCTGCAACTGATAGGGAAAGAATGCAGGAACACACGCTGAGACCCCGAGTATGACTGGACATGGAATTGATATTTgagacaataacctaaaagggGTGCAGAAGTACACCAGCACACCATTTTATGTTTAATCCATGGCCAACCATCCCTCTAGCTACTACTTATTCCACACTATATTTTATGCCCCATGGTCCCTCAACTTTGGACATTTTGGAACCTACACTTATTTTCCCTATGCTGCTTCCTTCACTTGTTCTTCTCCTGATTTGATCACTTCTAGACAGAGTAAAACATTTCAAAGTATTGTGGTCTACTGTTTTTGCCACCTTTTtatcacctgtgtaatgatgtccTCCTGCTGCATATTCTGGGGGTTCAGTTCAGACTGAATGCAGTGTTAAATGTGCTGCTCACAATTGACAGCAGCAACATGGGATATTTGAATTGACAAGAAGgatgttgatatacagtgccttgagaaagtaattacaccccttgaccttttccatatgttgtgttacagcctgaattaaaatggat

Function

NR:

description
PREDICTED: zinc finger protein 706-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053443.1 False 1017 mRNA 0.43 3 22666376 22667896
XR_005053444.1 True 886 mRNA 0.44 4 22666376 22667896

Neighbor

gene id symbol gene type direction distance location
LOC110531736 NA coding upstream 476073 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1235062 21430367 ~ 21431314 (+)
LOC110531733 LOC106577625 coding upstream 1310645 21292701 ~ 21355731 (+)
LOC118936359 LOC106577628 coding upstream 2116365 20540916 ~ 20550011 (+)
trip6 LOC106577628 coding upstream 2126817 20531945 ~ 20539559 (+)
sec24d LOC106577619 coding downstream 60203 22728099 ~ 22756998 (+)
LOC110531753 LOC106577617 coding downstream 342789 23010685 ~ 23011526 (+)
gba3 LOC106577614 coding downstream 437277 23105173 ~ 23111380 (+)
LOC110531759 LOC106577602 coding downstream 1068403 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 1097379 23765275 ~ 23780276 (+)
G782716 NA non-coding upstream 78068 22584227 ~ 22588308 (+)
G782672 NA non-coding upstream 141167 22524455 ~ 22525209 (+)
G782666 NA non-coding upstream 152193 22513887 ~ 22514183 (+)
G782665 NA non-coding upstream 154758 22511326 ~ 22511618 (+)
G782580 NA non-coding upstream 234135 22432026 ~ 22432241 (+)
G782791 NA non-coding downstream 28873 22696769 ~ 22697184 (+)
G782801 LOC106569888 non-coding downstream 45517 22713413 ~ 22713922 (+)
G782820 NA non-coding downstream 93968 22761864 ~ 22762522 (+)
G782821 NA non-coding downstream 94660 22762556 ~ 22762910 (+)
G782824 NA non-coding downstream 98357 22766253 ~ 22766486 (+)
G779964 NA other upstream 1564105 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 2584322 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 2626093 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 2642908 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 2773929 19876221 ~ 19914138 (+)
G783405 LOC106577615 other downstream 376111 23044007 ~ 23067530 (+)
LOC110531761 LOC106577604 other downstream 1134690 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 other downstream 1166268 23834071 ~ 23839257 (+)

Expression


Co-expression Network