LOC110531753 (LOC106577617)


Basic Information

Item Value
gene id LOC110531753
gene name LOC106577617
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23010685 ~ 23011526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615146.2
CCTATGGAGGACATGGGTGTTGAGGGAAACTACTTTGAACAGAACCCACAGAACCCACAGGTGTTTGAGGAAACAGACGCCGgacagggtctctctctctctctctctctctcgagccaTCAGAGGAGCTTGGTGTAGAGCAGTCCATGTCTCTGGAGGATGAGCAGGTGAAGACAGAAAGCAGTAGTGTATGCTCCACAGGCTGGTTCAAACATGGGCACCGCTGTTTCACATACATCCGCACCGAACGGACATGGGCCGAGTCGGAGCAGTACTGCGTGTTTCAGGGGGCCAACCTGGCATCCATCCACAGCACAGAAGAGAAGCACTTAATTCAGGAGATGATCCGCAGAGAGACACACGACTTCCCAAGAGTCTGGATCGGCGGACAGTACGCTACCCAGGAGCGCCTTTGGCTGTGGAGTGATGGGTCCAGGTTCTACTACCGCGACTGGAGCAATGTACAGCCTGATAACGCCATGGGAAATGAGAACTGTATGCATATGAACTATGGAGAAGAAAAACGCTGGAATGATTATGTCTGCAGTAGGACGTTACCTTCTGTATGTTCCATGAAACTATAAGCTCTGACGTCGCCTTAATCAAGATGTCTATTTTGTTTAGTTTTCCTATGTATTTTCATGATGACTATTAGCAAATGAGTAAGAATAAATTGCTACTTAACATGACTAACACGAAAAACCGCACTCCATTATGTGCATCATCGTTTCGATTTTTATCTCTGCATTTGTTAGTTACAGCCACCTTGTTAAGACCAAAATAAGGGCAGTTTGATCATGTTTGTCAAATATAAATAAAGGATTAGTCCTGTATATATTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615146.2 True 842 mRNA 0.46 1 23010685 23011526

Neighbor

gene id symbol gene type direction distance location
sec24d LOC106577619 coding upstream 253687 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 342789 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 820382 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1579371 21430367 ~ 21431314 (+)
LOC110531733 LOC106577625 coding upstream 1654954 21292701 ~ 21355731 (+)
gba3 LOC106577614 coding downstream 93647 23105173 ~ 23111380 (+)
LOC110531759 LOC106577602 coding downstream 724773 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 753749 23765275 ~ 23780276 (+)
LOC110531762 LOC106577606 coding downstream 780466 23791992 ~ 23795323 (+)
LOC110531761 LOC106577604 coding downstream 790625 23802151 ~ 23804811 (+)
G782941 NA non-coding upstream 40915 22909215 ~ 22969770 (+)
G782868 NA non-coding upstream 162492 22823068 ~ 22848193 (+)
G782825 NA non-coding upstream 243281 22767205 ~ 22767404 (+)
G782824 NA non-coding upstream 244199 22766253 ~ 22766486 (+)
G782821 NA non-coding upstream 247775 22762556 ~ 22762910 (+)
G783396 NA non-coding downstream 28369 23039895 ~ 23040220 (+)
G783405 LOC106577615 non-coding downstream 32481 23044007 ~ 23067530 (+)
G783410 LOC106577615 non-coding downstream 42509 23054035 ~ 23057049 (+)
G783582 NA non-coding downstream 223258 23234784 ~ 23263612 (+)
G783847 NA non-coding downstream 430011 23441537 ~ 23441873 (+)
G779964 NA other upstream 1908414 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 2928631 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 2970402 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 2987217 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 3118238 19876221 ~ 19914138 (+)
LOC110531763 LOC106577738 other downstream 822638 23834071 ~ 23839257 (+)

Expression


Co-expression Network