gba3 (LOC106577614)


Basic Information

Item Value
gene id gba3
gene name LOC106577614
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23105173 ~ 23111380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615149.2
ccaatttatgctttgtTCTAAATATGGTTGGAGGCGGTGTGTGTCGGGTGTGAGACCAAATTGAGTTCTGCACCGCCGTGCACTTtccaaatgttgtaacaatgcggagggctccgtATAGCTCCGCATCGACATTGATGGTTGACAGTAGGCAAATATAACCAACAGCCCTGAATGGAATTGTATCCATACGAACGATTCTGAAACCATGTTCCCGACTAACTTTGCATGGGGCGCGGCTACATCCGCTTATCAAATCGAAGGAGGCTGGAATGTGGATGACAAGGGACCGAGCATTTGGGACACGTTCTGTCACGAGGGGGGCAGACTAGTGTTCGAGGGCCAGAGTGGAGATGTCACCTGTAACAGCTATGAGCTCTGGGAAGAGGACCTCCGGTGTATCCGTCAGCTAGGCCTGACCCACTACCGcctgtctctgtcctggtccCGCCTGCTACCGGAGGGGATAACACGGCATGTCAATCAAAAAGGTTTGCGATACTACAACAAAGTGATCAATGATTTGGTGGCTAGTGACGTGTTGCCCATGGTTACTCTGTACCACTTTGACCTGCCACaagctctccaggaccagggagGTTGGAAATCACCTGAGATTGTGGCCATCTTTGACAGCTACGCCCGCTTCTGCTTTGGATCGTTCGGGGATCGTGTGAAACTGTGGATCACGTTGAACGAGCCGTACGTGTGCGCTAAACTGGGCCACGAGGATGGCATCTTTGCCCCGGGGGTAAAAGAACCAGGGATGGCTGCCTACCTGGTGGGCCACAACATGCTACGTGGACACGCCAGGGCCTGGCACAGCTACAATGTCCTCTACAGGGCAAAACAGGGTGGCTCGGTGTCCTTAGCGATTAATAGCGACTGGGCTGAACCGTTGGACCCGGCCAGTCCAGATGACACGGCCGCCACCGAACGCTACCTGGCCTTTACACTAGGGTGGTTTGCCTGGCCCCTGTTTGTCACTGGAGACTACCCAGAAGTGATGAGGTCTAGTATTGAGGCCAGAAGCAAAGAACTGGGTTACCAAGAAAGTTCTAGACTGCCCAGGTTTTCCAAAGACGAGCCTAGTCTTCTCGGCACGGCTGACTTTTTTGCGTTGAACTACTACACGTCTCGGAGGGTGAAGCCAGGGGAATGTTGTCCAGGGGTGTTGGGGTTGAAGAGTGACCAGGATGCAGAGGGGGTGGTGGACCCATCCTGGCCGGTATGTGGGGTGTCATGGCTGGCTGTGGTTCCTGACGGCTTGAGGAAACTGCTGAAGTACATTAAGGACACATTCAACAACCCTGCGGTCTACATCACAGAAAATGGCTTCTCCCAGGTGGGGCCAGTGGACATGGAAGATGTCCAGCGTTGTGGGTTTTACCATGACATCATCCAGGAAATAGCCAGAGCTCTCCGAGAGGATGGTGTTGACGTGCGAGGCTATTTCGCCTGGTCTCTCCTGGATAACTTTGAATGGGCCGACGGGTTCAGCGTACGTTTTGGACTGTTCCACGTGGACTTCTCTCGACCGGAGCGACCACGGACTGCGTACCGCTCTGGAAGGGAGTATGCCGGCATAATTTCCAAGTACAGATCTCAGACCATGGTAAATATCTAAACAGCCAATGGGCACAGTGTTAATCAGCCAataacagctttttttttttttttgctcaatGTCCTGTTCTAATCGACTGCAACCAAGCTTGGTCCATTGCAATGTTCCTACAGGCAATTTGGAATTGAAGCCCATCTGAAACAGATTGTAGCTCCACTTTTCTCTGTCAACCCTGAAAATGTTTTGTTAAACAGTGCTAAGCTTATACTGCTTCCTTCGCAATAAAGTGATTTTTGTCTGATTTC
>XM_036987597.1
GAGGCGGTGTGTGTCGGGTGTGAGACCAAATTGAGTTCTGCACCGCCGTGCACTTtccaaatgttgtaacaatgcggagggctccgtATAGCTCCGCATCGACATTGATGGTTGACAGCAAATATAACCAACAGCCCTGAATGGAATTGTATCCATACGAACGATTCTGAAACCATGTTCCCGACTAACTTTGCATGGGGCGCGGCTACATCCGCTTATCAAATCGAAGGAGGCTGGAATGTGGATGACAAGGGACCGAGCATTTGGGACACGTTCTGTCACGAGGGGGGCAGACTAGTGTTCGAGGGCCAGAGTGGAGATGTCACCTGTAACAGCTATGAGCTCTGGGAAGAGGACCTCCGGTGTATCCGTCAGCTAGGCCTGACCCACTACCGcctgtctctgtcctggtccCGCCTGCTACCGGAGGGGATAACACGGCATGTCAATCAAAAAGGTTTGCGATACTACAACAAAGTGATCAATGATTTGGTGGCTAGTGACGTGTTGCCCATGGTTACTCTGTACCACTTTGACCTGCCACaagctctccaggaccagggagGTTGGAAATCACCTGAGATTGTGGCCATCTTTGACAGCTACGCCCGCTTCTGCTTTGGATCGTTCGGGGATCGTGTGAAACTGTGGATCACGTTGAACGAGCCGTACGTGTGCGCTAAACTGGGCCACGAGGATGGCATCTTTGCCCCGGGGGTAAAAGAACCAGGGATGGCTGCCTACCTGGTGGGCCACAACATGCTACGTGGACACGCCAGGGCCTGGCACAGCTACAATGTCCTCTACAGGGCAAAACAGGGTGGCTCGGTGTCCTTAGCGATTAATAGCGACTGGGCTGAACCGTTGGACCCGGCCAGTCCAGATGACACGGCCGCCACCGAACGCTACCTGGCCTTTACACTAGGGTGGTTTGCCTGGCCCCTGTTTGTCACTGGAGACTACCCAGAAGTGATGAGGTCTAGTATTGAGGCCAGAAGCAAAGAACTGGGTTACCAAGAAAGTTCTAGACTGCCCAGGTTTTCCAAAGACGAGCCTAGTCTTCTCGGCACGGCTGACTTTTTTGCGTTGAACTACTACACGTCTCGGAGGGTGAAGCCAGGGGAATGTTGTCCAGGGGTGTTGGGGTTGAAGAGTGACCAGGATGCAGAGGGGGTGGTGGACCCATCCTGGCCGGTATGTGGGGTGTCATGGCTGGCTGTGGTTCCTGACGGCTTGAGGAAACTGCTGAAGTACATTAAGGACACATTCAACAACCCTGCGGTCTACATCACAGAAAATGGCTTCTCCCAGGTGGGGCCAGTGGACATGGAAGATGTCCAGCGTTGTGGGTTTTACCATGACATCATCCAGGAAATAGCCAGAGCTCTCCGAGAGGATGGTGTTGACGTGCGAGGCTATTTCGCCTGGTCTCTCCTGGATAACTTTGAATGGGCCGACGGGTTCAGCGTACGTTTTGGACTGTTCCACGTGGACTTCTCTCGACCGGAGCGACCACGGACTGCGTACCGCTCTGGAAGGGAGTATGCCGGCATAATTTCCAAGTACAGATCTCAGACCATGGTAAATATCTAAACAGCCAATGGGCACAGTGTTAATCAGCCAataacagctttttttttttttttgctcaatGTCCTGTTCTAATCGACTGCAACCAAGCTTGGTCCATTGCAATGTTCCTACAGGCAATTTGGAATTGAAGCCCATCTGAAACAGATTGTAGCTCCACTTTTCTCTGTCAACCCTGAAAATGTTTTGTTAAACAGTGCTAAGCTTATACTGCTTCCTTCGCAATAAAGTGATTTTTGTCTGATTTC
>XM_021615148.2
GGTGTGTGTCGGGTGTGAGACCAAATTGAGTTCTGCACCGCCGTGCACTTtccaaatgttgtaacaatgcggagggctccgtATAGCTCCGCATCGACATTGATGGTTGACAGTAGGTAATGGCTGGAGATCctatataaacacaaactcacttccttgaaaACTTCCTTCACAATAGCACTGCTCAACAGTTTTGCGCTGCTCCACGTAGCATGAATGCCACGGCAAATATAACCAACAGCCCTGAATGGAATTGTATCCATACGAACGATTCTGAAACCATGTTCCCGACTAACTTTGCATGGGGCGCGGCTACATCCGCTTATCAAATCGAAGGAGGCTGGAATGTGGATGACAAGGGACCGAGCATTTGGGACACGTTCTGTCACGAGGGGGGCAGACTAGTGTTCGAGGGCCAGAGTGGAGATGTCACCTGTAACAGCTATGAGCTCTGGGAAGAGGACCTCCGGTGTATCCGTCAGCTAGGCCTGACCCACTACCGcctgtctctgtcctggtccCGCCTGCTACCGGAGGGGATAACACGGCATGTCAATCAAAAAGGTTTGCGATACTACAACAAAGTGATCAATGATTTGGTGGCTAGTGACGTGTTGCCCATGGTTACTCTGTACCACTTTGACCTGCCACaagctctccaggaccagggagGTTGGAAATCACCTGAGATTGTGGCCATCTTTGACAGCTACGCCCGCTTCTGCTTTGGATCGTTCGGGGATCGTGTGAAACTGTGGATCACGTTGAACGAGCCGTACGTGTGCGCTAAACTGGGCCACGAGGATGGCATCTTTGCCCCGGGGGTAAAAGAACCAGGGATGGCTGCCTACCTGGTGGGCCACAACATGCTACGTGGACACGCCAGGGCCTGGCACAGCTACAATGTCCTCTACAGGGCAAAACAGGGTGGCTCGGTGTCCTTAGCGATTAATAGCGACTGGGCTGAACCGTTGGACCCGGCCAGTCCAGATGACACGGCCGCCACCGAACGCTACCTGGCCTTTACACTAGGGTGGTTTGCCTGGCCCCTGTTTGTCACTGGAGACTACCCAGAAGTGATGAGGTCTAGTATTGAGGCCAGAAGCAAAGAACTGGGTTACCAAGAAAGTTCTAGACTGCCCAGGTTTTCCAAAGACGAGCCTAGTCTTCTCGGCACGGCTGACTTTTTTGCGTTGAACTACTACACGTCTCGGAGGGTGAAGCCAGGGGAATGTTGTCCAGGGGTGTTGGGGTTGAAGAGTGACCAGGATGCAGAGGGGGTGGTGGACCCATCCTGGCCGGTATGTGGGGTGTCATGGCTGGCTGTGGTTCCTGACGGCTTGAGGAAACTGCTGAAGTACATTAAGGACACATTCAACAACCCTGCGGTCTACATCACAGAAAATGGCTTCTCCCAGGTGGGGCCAGTGGACATGGAAGATGTCCAGCGTTGTGGGTTTTACCATGACATCATCCAGGAAATAGCCAGAGCTCTCCGAGAGGATGGTGTTGACGTGCGAGGCTATTTCGCCTGGTCTCTCCTGGATAACTTTGAATGGGCCGACGGGTTCAGCGTACGTTTTGGACTGTTCCACGTGGACTTCTCTCGACCGGAGCGACCACGGACTGCGTACCGCTCTGGAAGGGAGTATGCCGGCATAATTTCCAAGTACAGATCTCAGACCATGGTAAATATCTAAACAGCCAATGGGCACAGTGTTAATCAGCCAataacagctttttttttttttttgctcaatGTCCTGTTCTAATCGACTGCAACCAAGCTTGGTCCATTGCAATGTTCCTACAGGCAATTTGGAATTGAAGCCCATCTGAAACAGATTGTAGCTCCACTTTTCTCTGTCAACCCTGAAAATGTTTTGTTAAACAGTGCTAAGCTTATACTGCTTCCTTCGCAATAAAGTGATTTTTGTCTGATTTC
>TU892315
TGTAGCTCCTTTAACTCTAACTCGTGCTTGCTTGACAATACAATATTTCACAACAAGAGGGTTGTtgtcttttttatatatatatttttttgttgtacaTGTAGGCAAATATAACCAACAGCCCTGAATGGAATTGTATCCATACGAACGATTCTGAAACCATGTTCCCGACTAACTTTGCATGGGGCGCGGCTACATCCGCTTATCAAATCGAAGGAGGCTGGAATGTGGATGACAAGGGACCGAGCATTTGGGACACGTTCTGTCACGAGGGGGGCAGACTAGTGTTCGAGGGCCAGAGTGGAGATGTCACCTGTAACAGCTATGAGCTCTGGGAAGAGGACCTCCGGTGTATCCGTCAGCTAGGCCTGACCCACTACCGcctgtctctgtcctggtccCGCCTGCTACCGGAGGGGATAACACGGCATGTCAATCAAAAAGGTAGCCGTACTCTGAGACTGTGTAGTGGTTACTTACGATAAGATTCCTCCAGTATTTATTTGTGGTGAATGCCTATGGCATATGATatgataaaaaataaagaaatatcatACATTATTGTGT

Function

NR:

description
cytosolic beta-glucosidase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615149.2 False 1872 mRNA 0.51 6 23105173 23111380
XM_036987597.1 False 1838 mRNA 0.52 6 23105203 23111380
XM_021615148.2 False 1945 mRNA 0.51 6 23105208 23111380
TU892315 True 567 TUCP 0.45 2 23105471 23108039

Neighbor

gene id symbol gene type direction distance location
LOC110531753 LOC106577617 coding upstream 93647 23010685 ~ 23011526 (+)
sec24d LOC106577619 coding upstream 348175 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 437277 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 914870 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1673859 21430367 ~ 21431314 (+)
LOC110531759 LOC106577602 coding downstream 624919 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 653895 23765275 ~ 23780276 (+)
LOC110531762 LOC106577606 coding downstream 680612 23791992 ~ 23795323 (+)
LOC110531761 LOC106577604 coding downstream 690771 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 coding downstream 722691 23834071 ~ 23839257 (+)
G783405 LOC106577615 non-coding upstream 37643 23044007 ~ 23067530 (+)
G783410 LOC106577615 non-coding upstream 48124 23054035 ~ 23057049 (+)
G783396 NA non-coding upstream 64953 23039895 ~ 23040220 (+)
G782941 NA non-coding upstream 135403 22909215 ~ 22969770 (+)
G782868 NA non-coding upstream 256980 22823068 ~ 22848193 (+)
G783582 NA non-coding downstream 123404 23234784 ~ 23263612 (+)
G783847 NA non-coding downstream 330157 23441537 ~ 23441873 (+)
G783865 NA non-coding downstream 350530 23461910 ~ 23462140 (+)
G783866 NA non-coding downstream 351320 23462700 ~ 23462961 (+)
G783896 NA non-coding downstream 376309 23487689 ~ 23488013 (+)
G779964 NA other upstream 2002902 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3023119 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 3064890 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 3081705 20009183 ~ 20090543 (+)
hacd4 hacd4 other downstream 970876 24077880 ~ 24087340 (+)
G785138 NA other downstream 1471007 24582387 ~ 24582877 (+)

Expression


Co-expression Network