LOC110531759 (LOC106577602)


Basic Information

Item Value
gene id LOC110531759
gene name LOC106577602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23736299 ~ 23749171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615158.2
GGTTGTCGTCTGTCAATAAGCCTCAAAGAAGAAGAACAACAGCTAGTCAGCAACATCGGTAGCTTGCTAACCAACAACCGAAACGTTAAAGGTCTTTAGACTGTTTTGGTGTATATTATTCACTGTGTTTTAAACACACTGCTGTCGTGTCTTTGTGTTACCCCATTTAATTTCATGTTACGTTGTTTCAAGCAGACCCACAGGCTGGTTAAGTTATCAGTAGCACTAATTTAGGCTAgtcgctaatgttagctagctagctagcatctcCGACCATGAGCTCACCCAGCTACTCTCTCCCTGCTAAGAAAGAGGTCTGCTGGACGAAGAAAGAGGGTATGTGGCTAAATATTGTCGTGAAAGAAGAAAGTGAAGAGGAGAACGTCACAGTAAAAAACGAAATAGAAGGTGAGGATGTTAtattgaaagaagaagagaaagacgtttcagtgaaagaagaggaggacgcATTCAAAGGGAAAGAGGATGGTGCCGTTTTTGGAgtgaaggaggaaggggagattactgtcacattgAATGAGGAAGATGAGACaggagatctgattaacaccaGAGTGAAACCAGACTCTCACTCTGACTACGGGATGCATCTTTCAGTGGAACCAGGCCCAAAgacgtccaaaccagcaagaccacaccattgctcccagtgtggaaagagttttactaaGTTACGAAACCTAAAagagcatgagaggacacacacagcagaaaagcctttccaatgttTGCAGTGTACAAAGAGTTTCTGCTGGTTAGGGAAGCTAAAAgtacatgagagaatacactcaggagaaaagccttaccactgctctcagtgtggaacAAGTTTTACCCAATTAGGGACCCTAAAAACACATGAGAAAATACACTCTGGAGTGAAGCCTTAtaactgctctcagtgtggaacTAGTTTTACCCGGTCAAGGGACCTGAAAGAGCAcgaaagaatacacacaggagagaagccttaccactgctcacaATGTGGAAAAACTTTTACCTGGTTAGGTAGCTTGAAAacgcatgagaggacacacacaggtgagaagccttaccactgttccCACTGCGGAAAGAGCTTTCCCCTATTAGGGAATCTGAACAACCATGAGAGAAcgcacacgggagagaagccttaccactgctcccattgtggaaagGGTTTTGGACAATTGGGACATCTAAAAGTGCAtgaaagaacacacacaggagagatgcCTTACCAGTGCTCCCATTGTGAAAAGGGGTTTGGACAATTGGGGCATCTAAAAGTGCAtgaaagaacacacacaggggagaagccttaccaatgctcccattgtggaaagggttttacccAAGTAGGGAGCCTGAAAACACAtgaaagaacacacacaggagagaagccctacCAATGCTCGcattgtggaaagggttttacccAGTTAGGGAGCCTGAAATCACATCAGAGGATACATACACGGGAGAAGAAGACCCAAGGAAGGGCAGCTGCTGCCTCCGCAGCAGCTAATTTGAATccataataaaaaattaaaaaatataataCTCCCAGTGTGGAAATAGTTTTGGACAATTAGAGCCCCTGAAATCACATGAGCTACTAGAGGCTGTGTTCTGAGTTATGTTTTTGACTGAGGAAGTGTTTTTGTTCATGCCACATGAAACTTAATTGtctgaaatatgtttttttttccgTCACAAATTTGATTAAAAtgttaaaatgtgtattttattttgattGAAAACTTTGATTGATTGGATACAAGTATAAACCTTTAGATATTGCTTGATATATGATTTTGGTATTTAAAAATGTAAACTATTCAATATATTaataaaatgtacatttcttGACTAACCTTGAAACCTCTTGAatttagttttatttattttagttaATTTGTGTACTCATAAGAGCTTTGTTGTGTATAGAAAAGTAAATATAttggaaatgtatataaaataGTTTGGTTGATTTATGATTGTGGAGAAAGATCTAGAATTATGTAGAAATGCTTATTAATGTATGGAAACCAAGccaggagtttttgtatggagatCAATCAGTTTTGAATCTGGTTAACAAAAACATTAATGGATTCTTTTTTTCCATGTGCATTTGATAAAATATAAGTTTTGTAATGCTAAAGTTGTTAGGAGTGTACGAATGTAAGTAGGACGCGTGACATCCCGGCAACTTT

Function

NR:

description
zinc finger protein 501-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615158.2 True 2225 mRNA 0.40 2 23736299 23749171

Neighbor

gene id symbol gene type direction distance location
gba3 LOC106577614 coding upstream 624919 23105173 ~ 23111380 (+)
LOC110531753 LOC106577617 coding upstream 724773 23010685 ~ 23011526 (+)
sec24d LOC106577619 coding upstream 979301 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 1068403 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 1545996 21595032 ~ 22190303 (+)
LOC110531760 LOC106577603 coding downstream 16104 23765275 ~ 23780276 (+)
LOC110531762 LOC106577606 coding downstream 42821 23791992 ~ 23795323 (+)
LOC110531761 LOC106577604 coding downstream 52980 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 coding downstream 84900 23834071 ~ 23839257 (+)
LOC110532973 aco1 coding downstream 93307 23842478 ~ 23845111 (+)
G784063 NA non-coding upstream 98413 23637683 ~ 23637886 (+)
G784056 NA non-coding upstream 113618 23622448 ~ 23622681 (+)
G783896 NA non-coding upstream 248286 23487689 ~ 23488013 (+)
G783866 NA non-coding upstream 273338 23462700 ~ 23462961 (+)
G783865 NA non-coding upstream 274159 23461910 ~ 23462140 (+)
G784096 NA non-coding downstream 47039 23796210 ~ 23797923 (+)
G784097 NA non-coding downstream 58722 23807893 ~ 23808082 (+)
G784165 NA non-coding downstream 66678 23815849 ~ 23816178 (+)
G784176 NA non-coding downstream 83642 23832813 ~ 23833043 (+)
G784179 NA non-coding downstream 92084 23841255 ~ 23841479 (+)
G783405 LOC106577615 other upstream 689254 23044007 ~ 23067530 (+)
G779964 NA other upstream 2634028 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3654245 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 3696016 20039611 ~ 20040283 (+)
hacd4 hacd4 other downstream 333085 24077880 ~ 24087340 (+)
G785138 NA other downstream 833216 24582387 ~ 24582877 (+)

Expression


Co-expression Network