LOC110531760 (LOC106577603)



Basic Information


Item Value
gene id LOC110531760
gene name LOC106577603
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23765275 ~ 23780276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021615159.2
GAAGTGACTTCTTCGTAGCCGGTTAGGATAAtttacgtagcaggttaggaggcCAAGGTTGAGGCTAGGAAAGGGTTAGGGAAAATCACTTCCGGTCGTAGCTGTATGCAGTGGCGTGAAACGTGTCCCTTCTTCAAATACAACAACAAGCTAGTAAGTCACTTCGGTAGGTTGCTAGCCAACATCGACGAACCTTTGAAGGTCTATACGTTTTCGGTGTAACGTTACTTTTATAGCCACGGTGTTTGTTTTAAACACATTTCTGTTGTATATCTAGTTACCCTCTTAATTGCACATATACGTTGCTAGTAAGTTAGCTGGATAACATAGCACCAGGCTAGTCGCCCAtgctaacatccccgaccatgagttcactaaaCTACTCCTCCCCTGATAAAGAAGAGGGGGTCTGCTTGACGGAGAAAGACGGTATTTGGTTGAACATTGTCGTAAAAGATGAGAAACAAGAGGAGGATGTCACAGTAAAAAAAGAAGAGGGTGAAGCTGTTACAGTGAAACAAGAGGAAGAaacgttcagagtgaaagaggaggatgttaccgtgaaagaagaggaggatgttaccgtgaaagaagaggaggaagagaaagaggatgcAGTTTTTGGAGTGAAGACGGAGGGAGAGATAACTGTCACTTCGGAAGAGACAGGAGATCGGATTAACACCAGAGAGAGGCCAGACTGTCACTCTGACAGCGAAAAGAGTCCTTCGGGGGAACCAGACCCAGAGACGTCCAAATCAGCAGGAAggcaccactgctcccagtgtggaaagagttttactctGCTATGGAACCTGAAAATACACAAGAGAATACACTCCGGAGAGAAGccataccactgctcccaatgtggaatgACTTTTACCTGGTTAGGTAGTCTGAAAACGCACAAGAGggcacacacaggagaaaaacctttccaatgttcccactgtggaaagagttttacccagttAGGGGACCTGAATAGGCACGAGAGGACGCATGGAGAAGAGAAGCCCtaccaatgctcccagtgtggaaaaagTTTTAGGTGGTTAGTGAGCCTGAAaacacatgagagaatacacacaggagaaaagccttaccactgttcccactgtggaaagagttttagggGGTCAGTGAGCCTGAAacagcatgagagaatacacacaggagagaagccttaccactgttccCACTGTGAGAAGAGTTTTAGGTGGTTAGGTACCTTGAAATTGCATGAGAGGAcccacacaggagaaaagccataCCAATGCTCcttgtgtggaaagagttttaccaagTTATGGGGCCTGAGTAGGCATAAGAGGACACATACAGGGGGGGATAGCACCTACCACTGCTCCTTGTGTGGAAAGAGATTTACCCAGTTAGTGGCCTTGAAAGAGcatgaaataatacatacaaatacacaggAGGGGAATACATACCACTGTTCTCATTGTGGAAAgacattttcccagtcagaggccctgaaatcacatgagagaatagagaggTTGTGTTCTGACTTATGTTTTTGACTGTGGTATTTTTTTTATGCCACATGAAATAGTCATTACCTGGGTTGTTGTTTTTTCCATCTTGAGACGTGATCATGTCTAAAAATCTGATTTAAATATTTTAATGTGTATTTTGTTTTGATTGATTGGATACAAGTATAAACCCTGCAATGCGGTTCATTATGTTATTTGGATATTgcaaaatgtgaattattatataAGTAAGTATCCTTGCACGAGCCTAGGCTTCTCTGAGCCAGAACGGCTCATAGGAGCAAGAGCCTTTCTCCtatttctgtagtgtgaggcaccTTGATGCAGTCTATTTAATGATTATATAGATTAATGGATTTTTGTATTTCTTGATTCTAACCTCTTGAATTTGAAATATGATTTAGATTTTGCTAAGTTAATTTGATTGGAAACACTATTACAGTTGCGGCCAAATATATAGGCACCCTTGCACTTTTCTTGAATAATTCCCTATTTCTTCTAAAGTAAGTTGAAATTGAAAGAATCTTTTGGTCTCCACATCTATTGGGATTTTCAACATTACGGAACCAATTTTATTTGTGTAAACATACATTTACAATTTTAATTCAGAAAATAAAGCCATGGCATGGACAAAGTTCTTGTTAAATTTTTTTATAAGAGGCTTTTTttcttgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagat
>TU893055
TATTTGGTTGAACATTGTCGTAAAAGATGAGAAACAAGAGGAGGATGTCACAGTAAAAAAAGAAGAGGGTGAAGCTGTTACAGTGAAACAAGAGGAAGAaacgttcagagtgaaagaggaggatgttaccgtgaaagaagaggaggaagagaaagaggatgcAGTTTTTGGAGTGAAGACGGAGGGAGAGATAACTGTCACTTCGGAAGAGACAGGAGATCGGATTAACACCAGAGAGAGGCCAGACTGTCACTCTGACAGCGAAAAGAGTCCTTCGGGGGAACCAGACCCAGAGACGTCCAAATCAGCAGGAAggcaccactgctcccagtgtggaaagagttttactctGCTATGGAACCTGAAAATACACAAGAGAATACACTCCGGAGAGAAGccataccactgctcccaatgtggaatgACTTTTACCTGGTTAGGTAGTCTGAAAACGCACAAGAGggcacacacaggagaaaaacctttccaatgttcccactgtggaaagagttttacccagttAGGGGACCTGAATAGGCACGAGAGGACGCATGGAGAAGAGAAGCCCtaccaatgctcccagtgtggaaaaagTTTTAGGTGGTTAGTGAGCCTGAAaacacatgagagaatacacacaggagaaaagccttaccactgttcccactgtggaaagagttttagggGGTCAGTGAGCCTGAAacagcatgagagaatacacacaggagagaagccttaccactgttccCACTGTGAGAAGAGTTTTAGGTGGTTAGGTACCTTGAAATTGCATGAGAGGAcccacacaggagaaaagccataCCAATGCTCcttgtgtggaaagagttttaccaagTTATGGGGCCTGAGTAGGCATAAGAGGACACATACAGGGGGGGATAGCACCTACCACTGCTCCTTGTGTGGAAAGAGATTTACCCAGTTAGTGGCCTTGAAAGAGcatgaaataatacatacaaatacacaggAGGGGAATACATACCACTGTTCTCATTGTGGAAAgacattttcccagtcagaggcc

Function


NR:

description
zinc finger protein 501-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021615159.2 False 2274 mRNA 0.42 2 23765275 23780276
TU893055 True 1045 TUCP 0.46 3 23765705 23779501

Neighbor


gene id symbol gene type direction distance location
LOC110531759 LOC106577602 coding upstream 16104 23736299 ~ 23749171 (+)
gba3 LOC106577614 coding upstream 653895 23105173 ~ 23111380 (+)
LOC110531753 LOC106577617 coding upstream 753749 23010685 ~ 23011526 (+)
sec24d LOC106577619 coding upstream 1008277 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 1097379 22666376 ~ 22667896 (+)
LOC110531762 LOC106577606 coding downstream 11716 23791992 ~ 23795323 (+)
LOC110531761 LOC106577604 coding downstream 21875 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 coding downstream 53795 23834071 ~ 23839257 (+)
LOC110532973 aco1 coding downstream 62202 23842478 ~ 23845111 (+)
LOC110531766 LOC106577601 coding downstream 96765 23877041 ~ 23886260 (+)
G784063 NA non-coding upstream 127389 23637683 ~ 23637886 (+)
G784056 NA non-coding upstream 142594 23622448 ~ 23622681 (+)
G783896 NA non-coding upstream 277262 23487689 ~ 23488013 (+)
G783866 NA non-coding upstream 302314 23462700 ~ 23462961 (+)
G783865 NA non-coding upstream 303135 23461910 ~ 23462140 (+)
G784096 NA non-coding downstream 15934 23796210 ~ 23797923 (+)
G784097 NA non-coding downstream 27617 23807893 ~ 23808082 (+)
G784165 NA non-coding downstream 35573 23815849 ~ 23816178 (+)
G784176 NA non-coding downstream 52537 23832813 ~ 23833043 (+)
G784179 NA non-coding downstream 60979 23841255 ~ 23841479 (+)
G783405 LOC106577615 other upstream 718230 23044007 ~ 23067530 (+)
G779964 NA other upstream 2663004 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3683221 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 3724992 20039611 ~ 20040283 (+)
hacd4 hacd4 other downstream 301980 24077880 ~ 24087340 (+)
G785138 NA other downstream 802111 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1150075 24872772 ~ 24952098 (+)

Expression



Co-expression Network