LOC110531762 (LOC106577606)


Basic Information

Item Value
gene id LOC110531762
gene name LOC106577606
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23791992 ~ 23795323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615161.2
ttaaacctcatcgaagaagAGGTTCTTCAACAACAGTTAGTGAGCCACCACCGTAGCTTGCTAGTCAACATAGCCGAAAGATTCAAGCTCTTTAGACTTCGGTGTATATTCGCCACTGTGTTTTGAACAGACTTTGGTCGTCAAGCTAGTTTACCATTTACATTTCATATTTACGTTGCTAGTAGTTAGCTAGCTGGATAGCTAAAACagcctagcactaggctagtcgATGATAATAatgtgctaactagctagctaacatccaaCCATGAGCTCATTAAGCTCCTGCCCTGATAAAGAAGAGGGGGtgtgctggacggagaaagagggTCTTTGGCTGAACATTGTcgtaaaagaggaggaggaggatgaggctgTCACAGTAAAAAAAGAggtagagggtgaggctgttgCAATTAAAGGTGAAGGAGCTCCAGTGAAGGAAGAGTttagagtgaaagaggaggacgtcgtcactgtgaaagaagagggggaagaaaaaGTGAAGGGTGCCGTTTTTGGAGTGAAGGAGGAGATAATTGTAACggtgaaagaagaagagactgGAGATCAGATTAACAACGgagagagacGAGACTCTCCCTCTGACAGCGAGAAGAGTCCTTCAGGTGAACCAGACCCAAAGACGTCCAAACCAGCAGGAcgacaccactgctcccagtgtggaaagagttttacccagttAGGGAGCTTGAAAacgcatgagagaatacacacaggagaaaagccctaccactgctcccagtgtgaaaAGAGTTTTAGGTGGTTAGGTAGTCTGAAAAAGCATGAGAAGACACACACACGAGAAAAGCCCTACCAATGCTCCCTTTGTGGTCAGAGTTTTACCCAGTTAGGGGCCCTCAATAAGCATGACAGGACACACACGGGAGGTGATAAGACCTACCACTGCTCCATGTGTGGAAAGGTATTTAACCGCTTAAGGCATCTGAATAAGCATGAAAGAatacatacacaggaggagaagacataccactgctctcatTGCGGAAAGACATTTTCCCAGTTAGAGGACCTGGAATCGcatgagagaatagagaggctGTGTTCTGACTTATGTTTTTGACTGGGAATTTGTGTTTTTGTTCATGCCACATGAAATCAAATTGTGTCAATTAAGTTTTACTCAAAAATAGGCCTCGAGACATAACTGTATAAAATCAGATTAAATATTTTAATGTGTATTTCATTTTGATAATGTCATTTAATTTCATTGGATACAAGTAAGTATAAACCATCCAATGTTGTTCATTATATTATTTGGATTTTGCAAATGTAAATTATTATATAAGTCACTAAGTAAGTAGCCTTTCACGAGCCTTGGCTTGTCTGAGCCAGAATTAATCTCCTATTTTTGTAGcttgaggcagcttgatgtacaagtacatcccctggacagtACACTTGTCTATTAAGTTATATATTGctgggttctgagaatatgaaatatacttattaatgtcactgagggagagaggataatgtataacgtttacattatgtcaggatatgtaattgttagccatcagggatcctATGGGAGGGATCCactgggag

Function

NR:

description
zinc finger protein 135-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615161.2 True 1596 mRNA 0.42 2 23791992 23795323

Neighbor

gene id symbol gene type direction distance location
LOC110531760 LOC106577603 coding upstream 11716 23765275 ~ 23780276 (+)
LOC110531759 LOC106577602 coding upstream 42821 23736299 ~ 23749171 (+)
gba3 LOC106577614 coding upstream 680612 23105173 ~ 23111380 (+)
LOC110531753 LOC106577617 coding upstream 780466 23010685 ~ 23011526 (+)
sec24d LOC106577619 coding upstream 1034994 22728099 ~ 22756998 (+)
LOC110531761 LOC106577604 coding downstream 6828 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 coding downstream 38748 23834071 ~ 23839257 (+)
LOC110532973 aco1 coding downstream 47155 23842478 ~ 23845111 (+)
LOC110531766 LOC106577601 coding downstream 81718 23877041 ~ 23886260 (+)
tspan5a LOC106577600 coding downstream 91454 23886777 ~ 23914624 (+)
G784063 NA non-coding upstream 154106 23637683 ~ 23637886 (+)
G784056 NA non-coding upstream 169311 23622448 ~ 23622681 (+)
G783896 NA non-coding upstream 303979 23487689 ~ 23488013 (+)
G783866 NA non-coding upstream 329031 23462700 ~ 23462961 (+)
G783865 NA non-coding upstream 329852 23461910 ~ 23462140 (+)
G784096 NA non-coding downstream 887 23796210 ~ 23797923 (+)
G784097 NA non-coding downstream 12570 23807893 ~ 23808082 (+)
G784165 NA non-coding downstream 20526 23815849 ~ 23816178 (+)
G784176 NA non-coding downstream 37490 23832813 ~ 23833043 (+)
G784179 NA non-coding downstream 45932 23841255 ~ 23841479 (+)
G783405 LOC106577615 other upstream 744947 23044007 ~ 23067530 (+)
G779964 NA other upstream 2689721 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3709938 20079382 ~ 20082084 (+)
hacd4 hacd4 other downstream 286933 24077880 ~ 24087340 (+)
G785138 NA other downstream 787064 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1135028 24872772 ~ 24952098 (+)

Expression


Co-expression Network