LOC110531761 (LOC106577604)


Basic Information

Item Value
gene id LOC110531761
gene name LOC106577604
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23802151 ~ 23804811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987610.1
ttgaccgctaggctCTATGGGCATTATGACTCATACTGAGGTAATCTATTATTTAATGAAATTAAGGAAAAATAAAACGTTTCCCTCAACTGCGTTACCTAATTCAGTCAGCAGTACCAACTCCAGTCCGCAGAAGGCGATATGCGTCTTTCAGCCGACGCTACCAGTGTGACGTACAATCTAGTTAACCGGACGcttcttcaacaacaacagcagctagTCAGCCACCACcgtagcttgctagccaacatagCCGAAGCATTGGGTATCTTTAGGTAATTTCGTTCTATATTAGCCACTGTGTTTTAAAAACACTTCTGTCGTCGTAAAGTTAGCTAGTTACCACCTTTCATTTCATATTTACGTTGCTATAGCTAGCTGGGTAGCTAAAACAGCCTAGTCGCTCAGGCTAACTAACTTGCCAACCTATCTGAGCATGAGTTTACTAAAATACTCTCCATTTGCTAAAGAAGAgggggtctgctggacggagaaagaagctctggggCTCGACATTGTcgtaaaagaggaggaggaagaggatgttccagtgaaaaaagaaaataaagaaattcctgtgaaagaagaggaaggagagttcagagtgaaagaggaggaggatgttactgtgaacgaagaggagaaagaaaaggaACAGGATACCGTTTTtggagtgaaggaggagggggagataacTGTCACAttgaaagaggaggatgagacTGGAGATCTGAATAACACCGGAGCCCAGAGCGAGGACAGACATTTTTCGGAAATAATGGTGAAGAGAGACCAGACTCTCACTCTGACAGCGGGGAGAGTCCTTCAGGGGAACCAGATGCAGAGACGTCCAAACAAGCGAGACGACaccactgttcccagtgtggaaagagttttactcagttaaGGGGCCTGAAAATGC
>XM_021615160.2
TATGACTCATACTGAGGTAATCTATTATTTAATGAAATTAAGGAAAAATAAAACGTTTCCCTCAACTGCGTTACCTAATTCAGTCAGCAGTACCAACTCCAGTCCGCAGAAGGCGATATGCGTCTTTCAGCCGACGCTACCAGTGTGACGTACAATCTAGTTAACCGGACGcttcttcaacaacaacagcagctagTCAGCCACCACcgtagcttgctagccaacatagCCGAAGCATTGGGTATCTTTAGGTAATTTCGTTCTATATTAGCCACTGTGTTTTAAAAACACTTCTGTCGTCGTAAAGTTAGCTAGTTACCACCTTTCATTTCATATTTACGTTGCTATAGCTAGCTGGGTAGCTAAAACAGCCTAGTCGCTCAGGCTAACTAACTTGCCAACCTATCTGAGCATGAGTTTACTAAAATACTCTCCATTTGCTAAAGAAGAgggggtctgctggacggagaaagaagctctggggCTCGACATTGTcgtaaaagaggaggaggaagaggatgttccagtgaaaaaagaaaataaagaaattcctgtgaaagaagaggaaggagagttcagagtgaaagaggaggaggatgttactgtgaacgaagaggagaaagaaaaggaACAGGATACCGTTTTtggagtgaaggaggagggggagataacTGTCACAttgaaagaggaggatgagacTGGAGATCTGAATAACACCGAAGAGAGACCAGACTCTCACTCTGACAGCGGGGAGAGTCCTTCAGGGGAACCAGATGCAGAGACGTCCAAACAAGCGAGACGACaccactgttcccagtgtggaaagagttttactcagttaaGGGGCCTGAAAATGCATaggagaatacacacaggagatacACCTTACCACTGTAtccactgtggaaagagttttaggtGGTTAGGAAGCCTAAAGGACCATAAGAgaatacacacgggagagaagcctcACCACTGCTCCGAGTGTGGAAAGCGTTTTACCCGATTACTACACCTGACATCACatcaaaggacacacacaggagaaaagcctttcccatgttcccagtgtggaaagggttttacccAGTTAGGGAGCCTGAAggagcatgagagaatacacacaggagaaagcCCTTTCccatgctcccagtgtggaaagagttttacccgtTTAAGGAGCTTGAAGggacatgagaggacacacacaggagaaaggcctttccaatgttcccagtgtggaaagggttttaaccGGATAGGGAGTCTGAAggagcatgagaggacacacacaggagaaaagcctttccaatgttcTCAGTGTGGAAATAGATTTACCCGGTTAGGGAACCTGAAAGGGCATGAAAGAATACATACAAAaccacaggaggaggaggaggagaagaaatacCATTGCTCTCATTGTGGAAAGAAATTTTTCAGATCAGAGGACCTGAAAACACATGAGAGGATAGAGAGGCTGTGTTCTGACTTAAGTTTTTGACTGagaatgtgtgtttttgttcatgCCACATGAAATCAAATTGTAAATGCAAAAGCTTGCTAAaaaaataggcctacatttgtttttcatttttaaccTCGAGGCATACAGGATGGTTCTCAATATGCATACGTTCTCTTGAGTACTGTCTTGTGAGGATGAATGTGGAGAAGGcataaaacatttgatttga
>TU893030
CATGAGTTTACTAAAATACTCTCCATTTGCTAAAGAAGAgggggtctgctggacggagaaagaagctctggggCTCGACATTGTcgtaaaagaggaggaggaagaggatgttccagtgaaaaaagaaaataaagaaattcctgtgaaagaagaggaaggagagttcagagtgaaagaggaggaggatgagacTGGAGATCTGAATAACACCGAAGAGAGACCAGACTCTCACTCTGACAGCGGGGAGAGTCCTTCAGGGGAACCAGATGCAGAGACGTCCAAACAAGCGAGACGACaccactgttcccagtgtggaaagagttttactcagttaaGGGGCCTGAAAATGCATaggagaatacacacaggagatacACCTTACCACTGTAtccactgtggaaagagttttaggtGGTTAGGAAGCCTAAAGGACCATAAGAgaatacacacgggagagaagcctcACCACTGCTCCGAGTGTGGAAAGCGTTTTACCCGATTACTACACCTGACATC

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987610.1 False 922 mRNA 0.45 3 23802151 23803971
XM_021615160.2 False 1697 mRNA 0.44 2 23802175 23804811
TU893030 True 516 TUCP 0.47 3 23802586 23804137

Neighbor

gene id symbol gene type direction distance location
LOC110531762 LOC106577606 coding upstream 6828 23791992 ~ 23795323 (+)
LOC110531760 LOC106577603 coding upstream 21875 23765275 ~ 23780276 (+)
LOC110531759 LOC106577602 coding upstream 52980 23736299 ~ 23749171 (+)
gba3 LOC106577614 coding upstream 690771 23105173 ~ 23111380 (+)
LOC110531753 LOC106577617 coding upstream 790625 23010685 ~ 23011526 (+)
LOC110531763 LOC106577738 coding downstream 29260 23834071 ~ 23839257 (+)
LOC110532973 aco1 coding downstream 37667 23842478 ~ 23845111 (+)
LOC110531766 LOC106577601 coding downstream 72230 23877041 ~ 23886260 (+)
tspan5a LOC106577600 coding downstream 81966 23886777 ~ 23914624 (+)
LOC110531768 NA coding downstream 171719 23976530 ~ 23987341 (+)
G784096 NA non-coding upstream 4228 23796210 ~ 23797923 (+)
G784063 NA non-coding upstream 164265 23637683 ~ 23637886 (+)
G784056 NA non-coding upstream 179470 23622448 ~ 23622681 (+)
G783896 NA non-coding upstream 314138 23487689 ~ 23488013 (+)
G783866 NA non-coding upstream 339190 23462700 ~ 23462961 (+)
G784097 NA non-coding downstream 3082 23807893 ~ 23808082 (+)
G784165 NA non-coding downstream 11038 23815849 ~ 23816178 (+)
G784176 NA non-coding downstream 28002 23832813 ~ 23833043 (+)
G784179 NA non-coding downstream 36444 23841255 ~ 23841479 (+)
G784200 NA non-coding downstream 71520 23876331 ~ 23918330 (+)
G783405 LOC106577615 other upstream 755106 23044007 ~ 23067530 (+)
G779964 NA other upstream 2699880 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3720097 20079382 ~ 20082084 (+)
hacd4 hacd4 other downstream 277445 24077880 ~ 24087340 (+)
G785138 NA other downstream 777576 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1125540 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1722862 25525371 ~ 25532692 (+)

Expression


Co-expression Network