LOC110531763 (LOC106577738)


Basic Information

Item Value
gene id LOC110531763
gene name LOC106577738
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23834071 ~ 23839257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615163.2
TGGACAGGAAGGGGTTAACGGCCAATGTGATTATCCGGATCTTGTGATCTAGACCTGAGCCATGAATGAGTGCCTTTTATGTGCAGTGAGCAGACTGCATCTCAGCCGGTAAAGCTGCCTGAAAACCACACATCGCGCTGCCAACGGAGCCCAGCTCTCCTGGGTGAACTGGAGAAGCTCAGCACTCTGATCCTGGACTGCAACAGCTACTCGTCCCACGTCAAATTCCCCTACATGCCTAGTGTCACCACCGTGTGGATCAACAAGAACAAGGTCGGCAACCTGCCCATCTTCGTTGAGGAGATCCGAAGCAAGTTCCCCAACATCAAGATTCTCAGCATGATGAACAACGAATCAGCACCCAGCTACTTCAATGGAGGGAGTCTAGACCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGAAGATCCTGGATGACACTGAGGttttggagaaagagagagcgcagGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAAGAGGAAGGAACTTCAACATTAAACCCTCCATAACACTGCTCCCTATCGAACTGAACTTCAAAGATTTATCAAGATGAGAAAAATAATCATTGTATAGATAACTAGTTCAAGGCAAGTTAGCACaatttcaaatatattttcaACATGTTTATCAAAATTAAAATGAGACTTATCTTATGACTTTATGGTTGAGGGGATTCTATGCTgaaatatggaattgttttaagatggtcatgcTATGGagtatttagctatttgatttggaattttaggaccccttcaGGTACAACACGTATTTgctaaaatattgaatttggcctttactactatagcacATAGAaatacattgaataacacattcataaatggctaAAAAGACAGTCAGAAAATAAATCATTAGGAACAAGTGTCTGTCCTTTTTCTAAAAGATATAAGAATGCTCAGgaaatatacagtatcagtctaaaggttggacacacctactcattcaagggtttttctttattttttactattttctacattgtagaataattgtgaagacattaa
>TU893032
ACTGCATCTCAGCCGGTAAAGCTGCCTGAAAACCACACATCGCGGGTGGATATTGGGAGTTATGGCGCCATGTATCTGAATCCCCTGGTAATCTGGCTAGTTGACACCGAGAAGTGAGGTGTTGGGAGGCTGTAGCTCTGCCTCTTGGCCATGGAGACAGGGGGGCCTGGTCAGCCCGGTCAGCCAGGCCCGGTGCTGGGGCTTCGGAGTCTCTCCTTTGCCTACCAGGGATTGCTAGAGATCCCCTACGAAGTCATACTAGCCCAGCGAGACACCCTGGAAGTGTTGGACCTCAGCTACAACCTGCTGGAGGACTCTCCTGGGTGAACTGGAGAAGCTCAGCACTCTGATCCTGGACTGCAACAGCTACTCGTCCCACGTCAAATTCCCCTACATGCCTAGTGTCACCACCGTGTGGATCAACAAGAACAAGGTCGGCAACCTGCCCATCTTCGTTGAGGAGATCCGAAGCAAGTTCCCCAACATCAAGATTCTCAGCATGATGAACAACGAATCAGCACCCAGCTACTTCAATGGAGGGAGTCTAGACCAGTACATAGACTACAGGCAGTATGTGATCAGTCAGATCCCAAGCCTGAAGATCCTGGATGACACTGAGGttttggagaaagagagagcgcagGCTAAGAAGACCTATAGGATGCAGAGGACCAGGGAAGGCAGCAAAAAGAGGAAGGAACTTCAACATTAAACCCTCCATAACACTGCTCCCTATCGAACTGAACTTCAAAGATTTATCAAGATGAGAAAAATAATCATTGTATAGATAACTAGTTCAAGGCAAGTTAGCACaatttcaaatatattttcaACATGTTTATCAAAATTAAAATGAGACTTATCTTATGACTTTATGGTTGAGGGGATTCTATGCTgaaatatggaattgttttaagatggtcatgcTATGGagtatttagctatttgatttggaattttaggaccccttcaGGTACAACACGTATTTgctaaaatattgaatttggcctttactactatagcacATAGAaatacattgaataacacattcataaatggctaAAAAGACAGTCAGAAAATAAATCATTAGGAACAA

Function

NR:

description
U2 small nuclear ribonucleoprotein A'-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615163.2 False 1079 mRNA 0.41 4 23834071 23839257
TU893032 True 1096 TUCP 0.45 5 23834164 23839114

Neighbor

gene id symbol gene type direction distance location
LOC110531761 LOC106577604 coding upstream 29260 23802151 ~ 23804811 (+)
LOC110531762 LOC106577606 coding upstream 38748 23791992 ~ 23795323 (+)
LOC110531760 LOC106577603 coding upstream 53795 23765275 ~ 23780276 (+)
LOC110531759 LOC106577602 coding upstream 84900 23736299 ~ 23749171 (+)
gba3 LOC106577614 coding upstream 722691 23105173 ~ 23111380 (+)
LOC110532973 aco1 coding downstream 3221 23842478 ~ 23845111 (+)
LOC110531766 LOC106577601 coding downstream 37784 23877041 ~ 23886260 (+)
tspan5a LOC106577600 coding downstream 47520 23886777 ~ 23914624 (+)
LOC110531768 NA coding downstream 137273 23976530 ~ 23987341 (+)
LOC110531767 LOC106577598 coding downstream 155969 23995226 ~ 24013837 (+)
G784176 NA non-coding upstream 1028 23832813 ~ 23833043 (+)
G784165 NA non-coding upstream 17893 23815849 ~ 23816178 (+)
G784097 NA non-coding upstream 25989 23807893 ~ 23808082 (+)
G784096 NA non-coding upstream 36148 23796210 ~ 23797923 (+)
G784063 NA non-coding upstream 196185 23637683 ~ 23637886 (+)
G784179 NA non-coding downstream 1998 23841255 ~ 23841479 (+)
G784200 NA non-coding downstream 37074 23876331 ~ 23918330 (+)
G784262 NA non-coding downstream 154932 23994189 ~ 23994389 (+)
G784269 NA non-coding downstream 178647 24017904 ~ 24018141 (+)
G783405 LOC106577615 other upstream 787026 23044007 ~ 23067530 (+)
G779964 NA other upstream 2731800 21101579 ~ 21102271 (+)
hacd4 hacd4 other downstream 242999 24077880 ~ 24087340 (+)
G785138 NA other downstream 743130 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1091094 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1688416 25525371 ~ 25532692 (+)
G786091 NA other downstream 1705974 25545231 ~ 25546967 (+)

Expression


Co-expression Network