LOC110532973 (aco1)


Basic Information

Item Value
gene id LOC110532973
gene name aco1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23842478 ~ 23845111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617117.2
ATGGACACCATCATCTTTGgtgtcacccatccctctgttcccctctcccaGGGCATCAAGGCTGTGCTGGCAGAGAGCTATGAGAGGATCCACCGCAGTAACCTGGTGGGCATGGGGGTCATCCCTCTGGAGTACCTGGCCGGGGACATGGCAGACACCCTGGGCCTGACGGGCCGAGTGCGTTACACCGTAGTCATCCTAGAGCCACTCACACCCCTGGTGATGATTGTTGACATTAAGCTCGACACGGGCAAAACATTCCAGGCGAGGATGAGGTTCGGCACAGACTGGAAGCTGACGTACTTCCACAACGGAGGCATCCTCAACTACATGATCCGCAAAAATGTCTGAGAACTAGAAGGAGCGCACCATCGGGACCAAGCCGCGCTGAACACGCACATCCTCCATGGGGACGGAGAGACAGAAAGCCCTGACTCGCCCTCTGTTGGTTTGAGTTCATCATGTTGTCTCCATTGGTTTTAGTGCATTAACCCGTAGACGTTTAGCCATAGGACTTCTTTGATTATGTAGTGCTGAGTGCTTATTACTGTTGGTGAGTAGGGTTGCACAATTCCAGATCCAGTTCATTCCCAGTTGTTCCAGGTCTTCCTGGTTAGTAGATTCAGGAGGGAATGAGCAGGAAATGCAGGAATTCTCCAACCGGGATTTTTTGGGAAAGTTGATGAAGGCCGAAATTTTAGTCTTTTAACCTTGCTTAAAACAAAAATGGAATCATTGTTAATGGTGAGCGAATGTTGCACCTTTTTTCTTTCctattttgggaaagttaccagaattgTTTCAACCCTAATGGTGAGTTTGGCTACCCTAGTACTAGTGTAACAGGGGGCGAGTTAATCAAATCAATCTATCAAATTAATATAAGTAAACATCATTAGATTTCTGACCTGAAGCCACATTTCATATTTTCTTGAAGCACTAATGGTTTTATGGACCAAATTGTTTCTGTCTATCAAATTGGAATGAAGGCCTACTTTGAGATTCGCACTTGTTTGTGACCTCGTCGCTCTGATATGGataaaatgtgtgttttgtctgcTAAAAGGCCATATCAGGGCTAGTGGCTGCCTCCTAACAGTCTTAGTGCTGTCCCCTTCCCGTTCTCCTTACCATAACTGGAGAGGCCAGGGGGAATTCCTGGTACATATCCACCATATTGCTTTCGCCTATTATGTATTGATAGTGATTGCACAATGATTTATATCAACTGTTATGTTATGGGCAGGTTGGCgtttattgggatgagtcttgtccttgaggcagaactgagcgatttccgctagatgggccagctgcaaagtcaaaattgcctATATTGTAACATTTATGAAAGAAAAACATTACCTTCTTAATTTCAagattagggttagcagtgtggttaggcttaaaataaaatgttatgacttgtggctgtgccagctagtgaccagtGCAGAGCTACCTCCAGATCAAGATTCATGATGAAAAATGCTAACCTGCATGATATGGCTCAGGGGCAGAGTAGACTACGTTTGTCAAATTGTT

Function

symbol description
aco1 Predicted to enable aconitate hydratase activity; iron-responsive element binding activity; and iron-sulfur cluster binding activity. Predicted to be involved in citrate metabolic process and tricarboxylic acid cycle. Predicted to act upstream of or within cellular iron ion homeostasis and response to iron(II) ion. Predicted to be located in cytoplasm. Predicted to be active in cytosol and mitochondrion. Is expressed in blood and presumptive blood. Orthologous to human ACO1 (aconitase 1).

NR:

description
cytoplasmic aconitate hydratase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617117.2 True 1545 mRNA 0.45 3 23842478 23845111

Neighbor

gene id symbol gene type direction distance location
LOC110531763 LOC106577738 coding upstream 3221 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 coding upstream 37667 23802151 ~ 23804811 (+)
LOC110531762 LOC106577606 coding upstream 47155 23791992 ~ 23795323 (+)
LOC110531760 LOC106577603 coding upstream 62202 23765275 ~ 23780276 (+)
LOC110531759 LOC106577602 coding upstream 93307 23736299 ~ 23749171 (+)
LOC110531766 LOC106577601 coding downstream 31930 23877041 ~ 23886260 (+)
tspan5a LOC106577600 coding downstream 41666 23886777 ~ 23914624 (+)
LOC110531768 NA coding downstream 131419 23976530 ~ 23987341 (+)
LOC110531767 LOC106577598 coding downstream 150115 23995226 ~ 24013837 (+)
hacd4 hacd4 coding downstream 232769 24077880 ~ 24087340 (+)
G784179 NA non-coding upstream 999 23841255 ~ 23841479 (+)
G784176 NA non-coding upstream 9435 23832813 ~ 23833043 (+)
G784165 NA non-coding upstream 26300 23815849 ~ 23816178 (+)
G784097 NA non-coding upstream 34396 23807893 ~ 23808082 (+)
G784096 NA non-coding upstream 44555 23796210 ~ 23797923 (+)
G784200 NA non-coding downstream 31220 23876331 ~ 23918330 (+)
G784262 NA non-coding downstream 149078 23994189 ~ 23994389 (+)
G784269 NA non-coding downstream 172793 24017904 ~ 24018141 (+)
G784277 NA non-coding downstream 180691 24025802 ~ 24026012 (+)
gba3 LOC106577614 other upstream 734439 23105173 ~ 23111380 (+)
G783405 LOC106577615 other upstream 795433 23044007 ~ 23067530 (+)
G785138 NA other downstream 737276 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1085240 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1682562 25525371 ~ 25532692 (+)
G786091 NA other downstream 1700120 25545231 ~ 25546967 (+)

Expression


Co-expression Network