XLOC_026635 (si:dkey-106c17.2)


Basic Information

Item Value
gene id XLOC_026635
gene name si:dkey-106c17.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38912557 ~ 38918717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051891
gtgtTTTATGGTTGATAAAGACCAGGCTGAAATCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATGCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTTAGGAACAACTTGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAAAAGAGACTCTGACACAAACAgggagactggtctgaaatacaTGATACCCCCAtgaaaaacggaagtgttggcaggtgtgcttaccagtttaatatttgatctgctatagttagaaatcagactgttatatcttTTAAgcgtaacgcctgtttcacaccgcaagcgtcagcggtgcgtgtttttttttggcgtccatgttaacagattagagctttcataccgtacgcagcagcgcgtcagagcgaggtgtgagcgtcgctgaagcagcagtgcagcgatagtttcggcgctgggtctatttttgacgcgctgctcacgctcaattaaagtgacagtgcattgataatgacctaaatacattgaatgacagtaaaaagtaacaATTTTACTCAATAAATGCGTCAATAATATCAACcgatttatatatagtcaatcaaatgaacttaaaccattaaaaactgcaacaaacctTTATTtcggcccgaactacaaaaccaatagttaaacaattttagtatcagttttctTGGCGAGGGTAAGTGATTTACGGGAATTGTAGTCCATAgcaaagtgtattgtgggtagtgtagttcgacatgcatgctggatgatgtgaactCACTGTGTGCTGTGCTGCTCAAGCAGAGGAAGAAAGCTTTATTCGGCTTTGCTTTATGTTCGCTTAAGTTATTTCAcctgggagctgtttgcactgtgaaactgacaacacaacaaataagtaaaagaagggcATGCATTGA
>TCONS_00051892
acacacacacacacccacgcacaGGCAACTGCCATTTTCACCAGTGAAGAGGACAGGTGAAGAGGACAAGTGAAGAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTAC
>TCONS_00051893
acaGGCAACTGCCATTTTCACCAGTGAAGAGGACAGGTGAAGAGGACAAGTGAAGAGgtgtTTTATGGTTGATAAAGACCAGGCTGAAATCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATGCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGTGTGTTGCTATTTGTTTTatagtgctttcacacctacacttttgtttcagaacctgtctcgtttggcCAGTtcgcgcggttcgtttggcatatgtgaacaaggCAATTGCGCTCTATTCCACGCCAAAGCAATCGCTCCGAGACCGCCTGAGTGAGgtagtctcggctcgattgaaacgaaccctggagcggttcgattgcagtgtgaaagtgaaccgctccaagagcaaagagcaacaatgtaacatttgtaatgtctttttcggaacaactgaatcgattcacagatgtgaaagcacccttatagtACAATTGTATGTTCTAATGTGTCATTCTACTTTGGTAACAAGCTTGTAacatgcatttttaatatgtgaaaaaataatgttaatgacAGCTAATATAAAATGGTAACCCACATAcagtatgaagagttcagatgcaaaagtctCTAAGTCAGGTCTCAAACTGCTGACCCTCAAACCATTTGCGGccctgcctcctcctccatccgGCCCACAACTGACATCAAAAATATAATGATATTTGGCCcatcaaaacatatatttttgaatcgCTATCATTGTTGTGCTATCACATACTTCTGGTTTTGACTCCccacctactggacatttaaagtTACATTTTAGGTGACAGGGTTACTTTCGATTTCTCTCAGTGTGCGGTCAAGAGTaacacatgcagattatttccGGGGCTGATTTAAACATTGAAAATTATGTACGTAAGcgctctatttttgtaaatattcaagggtcatttgattataCTCAGTTTTATACCCCCTGTACTTTGTTGTACAAACACCTTTTTATGGCTTACACATGTTTGTGTAAATATGATAGTCttgctaatattcgattcaaatggTCTTATGAATAGATTTTCCTCGTATACATATTAAGATTTGGATAAAAGTGTATTAGTAAAATTTTACTGTTGGCtgtattaaacatgttaaagtaaatatGAATATGTACATCCTTATCCCCTCTTTATTTTTACCAAAAAGAATGATATTGAGAAGAACGATTGCCAGCAACGTCAATAAAGTAACCCAAACTACA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-612 No description available

Ensembl:

ensembl_id ENSDARG00000094994

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051891 False 1101 mRNA 0.41 3 38912557 38915998
TCONS_00051892 False 149 processed_transcript 0.46 2 38913378 38918717
TCONS_00051893 True 1354 mRNA 0.39 3 38914269 38918697

Neighbor

gene id symbol gene type direction distance location
XLOC_026634 znf281a coding downstream 128606 38762891 ~ 38783951 (-)
XLOC_026633 si:ch211-198m17.1 coding downstream 166959 38705425 ~ 38745598 (-)
XLOC_026632 mpp3a coding downstream 219637 38647987 ~ 38692920 (-)
XLOC_026631 BX936420.1 coding downstream 383141 38525979 ~ 38529416 (-)
XLOC_026630 baxa coding downstream 1126684 37776489 ~ 37785873 (-)
XLOC_026636 NA coding upstream 52718 38971435 ~ 38975698 (-)
XLOC_026637 NA coding upstream 193597 39112314 ~ 39113547 (-)
XLOC_026638 svilc coding upstream 194181 39112898 ~ 39171968 (-)
XLOC_026639 cdk21 coding upstream 257143 39175860 ~ 39180048 (-)
XLOC_026640 retsat coding upstream 262670 39181387 ~ 39190317 (-)
XLOC_026626 NA non-coding downstream 1263168 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1327750 37581522 ~ 37584807 (-)
XLOC_026621 CT573704.2 non-coding downstream 1836744 37075698 ~ 37075813 (-)
XLOC_026619 NA non-coding downstream 1940335 36969403 ~ 36972222 (-)
XLOC_026646 CU464118.1 non-coding upstream 453156 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 643067 39561784 ~ 39563301 (-)
XLOC_026651 BX322795.1 non-coding upstream 730728 39649445 ~ 39649562 (-)

Expression


Co-expression Network