hacd4 (hacd4)


Basic Information

Item Value
gene id hacd4
gene name hacd4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24077880 ~ 24087340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615175.2
GGAAAAAGCACCAAACATCACTGAATATCCGACCAACCTCCTTGACGTCAGATAGTTGCCCTTGTATGAGAGAGATGTCGACTTCCTCGAATTTGGGATTTCCAAAAGCACAGGAAACAACTTTAGTACATCATTTACTTATTCGTCCGTCGTTTCCAGGTGAAATGAGGCTCAGCATTCGACTTGCTTACCTTTTCCTGTATAACCTGCTTCAGTTCTGTGGGCACACATGGATATTTGCAAACATGACAGCCAGGTTTCTCACATTTGGTGGAGACGCGCTTGCTGACACCTTCTATGCTGTGGGGGTTGTGATGAGTCTATGCCAGCTGTTGTCCGTGCTGGAGCTCTTCCACATCGCTGATGGGATCGAGAAGGCACGCCTTCTGCCACGGTTTGTTCAAgttatgaccagaaACTTCCTACTGTTTATGGTGATAGTCAGTCAAGAGGAGATGCAGAGTAAACCAGTTGTGTGTGCACAGTTTTACCTGTGGAATATTCTAGATCTGTTAAGGTACCCCCATGTTCTCCTGTGTTTGATGGGCACGGATTCCTTTGGCATGCTGTGGGCTCGATACACCCTATCCATCCCCATCTACATAGTCTCAGTCATCACAGAAGGCATTACCATTCACCAATCACTGCCTTACTTTGAGTCATTGGGAACATACTCATTCCAGCTCAGCCTGCCGGTGTCTGCAGGCATTTACTTCCCTATCCTCCTGAAGGCATACTTACCGTTACTGGCTGTTGGGGCTTGTGTAACAGTGTGGCATTCGCTGAGGGCGAGAGAACTGCGTCTTGAGAAGTGGAATAAGAAGATTAAAAGGAAATGAGGTGGATTTCTTATTGCAGGATATATCACTTCGGGAGTTACTTaagaagacatgaagacattatgacCCAACAGCAAATGAGAACATCTTCCTAAGAAGCCTTCTTTGCACAACATCGCTTTGATGAGGTCACACTTTCGGGAATAGTTGGATAAGCAAAATGTTTATAAACGTGTTGAGTTGAGAAAC
>XM_021615177.2
GGAAAAAGCACCAAACATCACTGAATATCCGACCAACCTCCTTGACGTCAGATAGTTGCCCTTGTATGAGAGAGATGTCGACTTCCTCGAATTTGGGATTTCCAAAAGCACAGGAAACAACTTTAGTACATCATTTACTTATTCGTCCGTCGTTTCCAGGTGAAATGAGTGTGTATTCTTTTCTTTTCTAGGCTCAGCATTCGACTTGCTTACCTTTTCCTGTATAACCTGCTTCAGTTCTGTGGGCACACATGGATATTTGCAAACATGACAGCCAGGTTTCTCACATTTGGTGGAGACGCGCTTGCTGACACCTTCTATGCTGTGGGGGTTGTGATGAGTCTATGCCAGCTGTTGTCCGTGCTGGAGCTCTTCCACATCGCTGATGGGATCGAGAAGGCACGCCTTCTGCCACGGTTTGTTCAAgttatgaccagaaACTTCCTACTGTTTATGGTGATAGTCAGTCAAGAGGAGATGCAGAGTAAACCAGTTGTGTGTGCACAGTTTTACCTGTGGAATATTCTAGATCTGTTAAGGTACCCCCATGTTCTCCTGTGTTTGATGGGCACGGATTCCTTTGGCATGCTGTGGGCTCGATACACCCTATCCATCCCCATCTACATAGTCTCAGTCATCACAGAAGGCATTACCATTCACCAATCACTGCCTTACTTTGAGTCATTGGGAACATACTCATTCCAGCTCAGCCTGCCGGTGTCTGCAGGCATTTACTTCCCTATCCTCCTGAAGGCATACTTACCGTTACTGGCTGTTGGGGCTTGTGTAACAGTGTGGCATTCGCTGAGGGCGAGAGAACTGCGTCTTGAGAAGTGGAATAAGAAGATTAAAAGGAAATGAGGTGGATTTCTTATTGCAGGATATATCACTTCGGGAGTTACTTaagaagacatgaagacattatgacCCAACAGCAAATGAGAACATCTTCCTAAGAAGCCTTCTTTGCACAACATCGCTTTGATGAGGTCACACTTTCGGGAATAGTTGGATAAGCAAAATGTTTATAAACGTGTTGAGTTGAGAAAC
>TU893234
gacattaacaTTTGAAACGAGTGTTAAGATGGAACAAAAATGTGCACCACTCCAATGGTTGCTAATGGGTTGACTTTTGGTTCTGTCTGGCATTTGCAGGTACCCCCATGTTCTCCTGTGTTTGATGGGCACGGATTCCTTTGGCATGCTGTGGGCTCGATACACCCTATCCATCCCCATCTACATAGTCTCAGTCATCACAGAAGGCATTACCATTCACCAATCACTGCCTTACTTTGAGTCATTGGGAACATACTCATTCCAGCTCAGCCTGCCGGTGTCTGCAGGCATTTACTTCCCTATCCTCCTGAAGGCATACTTACCGTTACTGGCTGTTGGGGCTTGTGTAACAGTGTGGCATTCGCTGAGGGCGAGAGAACTGCGTCTTGAGAAGTGGAATAAGAAGATTAAAAGGAAATGAGGTGGATTTCTTATTGCAGGATATATCACTTCGGGAGTTACTTaagaagacatgaagacattatgacCCAACAGCAAATGAGAACATCTTCCTAAGAAGCCTTCTTTGCACAACATCGCTTTGATGAGGTCACACTTTCGGGAATAGTTGGATAAGCAAAATGTTTATAAACGTG

Function

symbol description
hacd4 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human HACD4 (3-hydroxyacyl-CoA dehydratase 4).

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615175.2 False 1028 mRNA 0.45 7 24077880 24087340
XM_021615177.2 False 1050 mRNA 0.45 7 24077880 24087340
TU893234 True 596 TUCP 0.44 3 24082256 24087326

Neighbor

gene id symbol gene type direction distance location
LOC110531767 LOC106577598 coding upstream 64043 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 90539 23976530 ~ 23987341 (+)
tspan5a LOC106577600 coding upstream 163256 23886777 ~ 23914624 (+)
LOC110531766 LOC106577601 coding upstream 191620 23877041 ~ 23886260 (+)
LOC110532973 aco1 coding upstream 232769 23842478 ~ 23845111 (+)
mllt3 LOC106577592 coding downstream 61706 24149046 ~ 24197744 (+)
LOC110531780 bank1 coding downstream 282489 24369829 ~ 24403607 (+)
LOC110531781 LOC106577736 coding downstream 369318 24456658 ~ 24484458 (+)
LOC110531785 plap coding downstream 513994 24601334 ~ 24624296 (+)
LOC110531793 LOC106577583 coding downstream 632685 24720025 ~ 24726878 (+)
G784271 NA non-coding upstream 36396 24038627 ~ 24041484 (+)
G784277 NA non-coding upstream 51868 24025802 ~ 24026012 (+)
G784269 NA non-coding upstream 59739 24017904 ~ 24018141 (+)
G784262 NA non-coding upstream 83491 23994189 ~ 23994389 (+)
G784382 NA non-coding downstream 85802 24173142 ~ 24173363 (+)
G784366 NA non-coding downstream 104277 24191617 ~ 24272071 (+)
G784365 LOC103399096 non-coding downstream 119836 24207176 ~ 24208822 (+)
G784387 NA non-coding downstream 159308 24246648 ~ 24248520 (+)
G784437 NA non-coding downstream 188704 24276044 ~ 24278695 (+)
LOC110531763 LOC106577738 other upstream 238766 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 273743 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 298379 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 969841 23105173 ~ 23111380 (+)
G783405 LOC106577615 other upstream 1030835 23044007 ~ 23067530 (+)
G785138 NA other downstream 495047 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 843011 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1440333 25525371 ~ 25532692 (+)
G786091 NA other downstream 1457891 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 1625657 25712997 ~ 25742909 (+)

Expression


Co-expression Network