LOC110531775 (LOC107706756)


Basic Information

Item Value
gene id LOC110531775
gene name LOC107706756
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24206453 ~ 24208980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615180.2
accgaagaagaagaagaagaagaagaagaagaacaagcTGTAACTTTCAAAGACTTGGCCTTTATTGTTTGACCTGTCATGATCTATTgcctgtttgtttttttctcatgaaattattatgattattataatAACATAAATGGAGAATTAAATAGAAACGACATTATCCAACGTCCAGTGAGGAATGACGTGTCACATTTTCCCGCACATTGAGCACTTTTGCATTGTGATTGGTTAAGCGCTATGCCAAAAAATGAATTCGAGAGTTGATTGGCTGACTTCCTCCATGCAAAGTCCCGGATCAAGCTCCCCTTCATAAATGCATGGCAATCTGATGCGGAACTAGTTGTTTAAACTAGACAAGTGCTCGCCGAGGATCTGTGCAGCTGCAAAAAGCCAGGACATCATATAAAAtgGCTGGTGGGAAGGCAGGAAAAGACTCCGGGAAGACGAAGACAAAGGCCATTTCGCGCTCACAGAGGGCGGGTTTGCAGTTCCCCGTGGGTCGTATTCACAGACATCTGAAATCCAGAACAACGAGCCATGGTCGAGTTGGCGCGACTGCAGCTGTCTACAGCGCGGCTATTCTTGAATACCTAACTGCTGAGGTTCTGGAGCTGGCAGGAAATGCATCAAAGGATCTGAAGGTCAAGCGTATCACTCCACGTCACTTGCAACTGGCCATTAGAGGCGATGAGGAGTTGGATTCTCTCATCAAAGCAACCATTGCTGGTGGTGGTGTCATCCCTCATATCCACAAGTCACTGATTGGAAAGAAGGGACAGCAGAAGACTGTATAACCCTGCAAACAGTGGCATGGGGTCATCTCAGGACATTCTGCTTCAATGTTTTGCTTGGTAGAACTTTAGgactttttaaatgtattaactTGCATCTACTCATCTGAGGAAAAGTGGCTTCAGAGAAGCTGGTTTTGATTTTTGGCTTTGTTGATGTGTGCTGTTTTTATTGTGTACATTTTGGCATACCAGTGGCATTTCCATGTTTGAAGTTGTATTTGAATAAAGCGCCACGGTATTGTGCATCTGTTCCTT
>TU893822
GGCAATCTGATGCGGAACTAGTTGTTTAAACTAGACAAGTGCTCGCCGAGGATCTGTGCAGCTGCAAAAAGCCAGGACATCATATAAAAtgGCTGGTGGGAAGGCAGGAAAAGACTCCGGGAAGACGAAGACAAAGGCCATTTCGCGCTCACAGAGGGCGGGTTTGCAGTTCCCCGTGGGTCGTATTCACAGACATCTGAAATCCAGAACAACGAGCCATGGTCGAGTTGGCGCGACTGCAGCTGTCTACAGCGCGGCTATTCTTGAATACCTAACTGCTGAGGTTCTGGAGCTGGCAGGAAATGCATCAAAGGATCTGAAGGTCAAGCGTATCACTCCACGTCACTTGCAACTGGCCATTAGAGGCGATGAGGAGTTGGATTCTCTCATCAAAGCAACCATTGCTGGTGGTGGTGTCATCCCTCATATCCACAAGTCACTGATTGGAAAGAAGGGACAGCAGAAGACTGTATAACCCTGCAAACAGTGGCATGGGGTCATCTCAGGACATTCTGCTTCAATGTTTTGCTTGGTAGAACTTTAGgactttttaaatgtattaactTGCATCTACTCATCTGAGGAAAAGTGGCTTCAGAGAAGCTGGTTTTGATTTTTGGCTTTGTTGATGTGTGCTGTTTTTATTGTGTACATTTTGGCATACCAGTGGCATTTCCATGTTTGAAGTTGTATTTGAATAAAGCGCCACGGTATTGTGCATCTGTTCCTTGTTTACGTCTTTTAGTGAGAATTTGTGCCCTATAAATCTGGGTTAGTCTACATGTCCCTAACTTGCAATGTGGGAAATACTATAATTACATCTCCAATCATGTTTATTTCATGGATGTTAACTTTTCCAGCTCCTTTGTAGGTGACTGACCAGGATTGTGTGGACTGGTTCATGTGCTGGCACAACCTTGAATGACATCAAATGCCATGTTTTGTTGCTCAAGTGCACCCCCTAAGGTAAAAGTTTCATAGCCCATTGGTGGGCAATGGGCGGCTTGGATCTGAGCCCATGCCATTCTTCAATGTCAATCTTGATGGGACCATTTATAAATTAGACATACTTTGTGTCAACTTCTGTTTCTGGCCTGCAAATTGCTTTTGACAAACGGTGGTGTGTCTGCAGCCCTTCAATTAATATTTAAACCTTGTGGCCCTCTAGCTGACATTCCCATCCTGATGTAGCCTCTGTCCAGGTGTTCCTAAGGGAGAAATTGTATGGGTGTGAGATTGGCATGCTTCAGACAGTTGGAGCTCCCTTGCGGGAAATACTTTCTTGGTGAGCCTTCACACAGCagaaatattgctgctgtgaatGGCAAACGCATAAAAGAAGCTTTAACTTTGAGTATATATAACTCGTCAGTGTGATTTTAGTCTTTAACATGACTCCCTAATAAAATGACAGCACA
>TU893823
GGCAATCTGATGCGGAACTAGTTGTTTAAACTAGACAAGTGCTCGCCGAGGATCTGTGCAGCTGCAAAAAGCCAGGACATCATATAAAAtgGCTGGTGGGAAGGCAGGAAAAGACTCCGGGAAGACGAAGACAAAGGCCATTTCGCGCTCACAGAGGGCGGGTTTGCAGTTCCCCGTGGGTCGTATTCACAGACATCTGAAATCCAGAACAACGAGCCATGGTCGAGTTGGCGCGACTGCAGCTGTCTACAGCGCGGCTATTCTTGAATACCTAACTGCTGAGGTTCTGGAGCTGGCAGGAAATGCATCAAAGGATCTGAAGGTCAAGCGTATCACTCCACGTCACTTGCAACTGGCCATTAGAGGCGATGAGGAGTTGGATTCTCTCATCAAAGCAACCATTGCTGGTGGTGGTGTCATCCCTCATATCCACAAGTCACTGATTGGAAAGAAGGGACAGCAGAAGACTGTATAACCCTGCAAACAGTGGCATGGGGTCATCTCAGGACATTCTGCTTCAATGTTTTGCTTGGTAGAACTTTAGgactttttaaatgtattaactTGCATCTACTCATCTGAGGAAAAGTGGCTTCAGAGAAGCTGGTTTTGATTTTTGGCTTTGTTGATGTGTGCTGTTTTTATTGTGTACATTTTGGCATACCAGTGGCATTTCCATGTTTGAAGTTGTATTTGAATAAAGCGCCACGGTATTGTGCATCTGTTCCTTGTTTACGTCTTTTAGTGAGAATTTGTGCCCTATAAATCTGGGTTAGTCTACATGTCCCTAACTTGCAATGTGGGAAATACTATAATTACATCTCCAATCATGTTTATTTCATGGATGTTAACTTTTCCAGCTCCTTTGTAGGTGACTGACCAGGATTGTGTGGACTGGTTCATGTGCTGGCACAACCTTGAATGACATCAAATGCCATGTTTTGTTGCTCAAGTGCACCCCCTAAGGTAAAAGTTTCATAGCCCATTGGTGGGCAATGGGCGGCTTGGATCTGAGCCCATGCCATTCTTCAATGTCAATCTTGATGGGACCATTTATAAATTAGACATACTTTGTGTCAACTTCTGTTTCTGGCCTGCAAATTGCTTTTGACAAACGGTGGTGTGTCTGCAGCCCTTCAATTAATATTTAAACCTTGTGGCCCTCTAGCTGACATTCCCATCCTGATGTAGCCTCTGTCCAGGTGTTCCTAAGGGAGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615180.2 False 1055 mRNA 0.44 5 24207141 24208980
TU893822 False 1418 TUCP 0.44 5 24206453 24208655
TU893823 True 1219 TUCP 0.45 5 24206652 24208655

Neighbor

gene id symbol gene type direction distance location
focad focad coding downstream 56262 24087421 ~ 24150879 (-)
c9h4orf54 LOC106577596 coding downstream 157400 24038626 ~ 24049741 (-)
trmt10a LOC106577597 coding downstream 183451 24020010 ~ 24023690 (-)
LOC110532975 LOC106577599 coding downstream 231587 23916608 ~ 23975554 (-)
frem1a frem1 coding downstream 330201 23845242 ~ 23876940 (-)
LOC110531776 ddit4l coding upstream 15849 24224829 ~ 24228209 (-)
LOC110531777 LOC106577588 coding upstream 37671 24246651 ~ 24258979 (-)
LOC110531778 NA coding upstream 61134 24270114 ~ 24367630 (-)
LOC110531782 LOC106577586 coding upstream 282340 24491320 ~ 24585820 (-)
LOC110531784 LOC106577585 coding upstream 384386 24593366 ~ 24601145 (-)
G784852 LOC106577592 non-coding downstream 29674 24176911 ~ 24177467 (-)
G784848 NA non-coding downstream 37550 24169380 ~ 24169591 (-)
G784839 NA non-coding downstream 51082 24155790 ~ 24156059 (-)
G784767 NA non-coding downstream 163877 24042826 ~ 24043264 (-)
G784981 NA non-coding upstream 214757 24423737 ~ 24424584 (-)
G784987 NA non-coding upstream 219226 24428206 ~ 24428473 (-)
G785323 NA non-coding upstream 382319 24591299 ~ 24591527 (-)
G785329 plap non-coding upstream 409214 24605485 ~ 24619053 (-)
G785370 LOC106577580 non-coding upstream 532647 24741627 ~ 24765206 (-)
G784651 NA other downstream 398869 23806558 ~ 23808272 (-)
G784652 NA other downstream 405457 23800783 ~ 23801684 (-)
G784602 NA other downstream 467628 23737221 ~ 23739513 (-)
G782003 NA other downstream 2430931 21775718 ~ 21776210 (-)
G785578 NA other upstream 754092 24963072 ~ 24965274 (-)
G787211 NA other upstream 1081935 25290915 ~ 25291471 (-)
trmt44 trmt44 other upstream 1085209 25294038 ~ 25309252 (-)
LOC110531812 LOC106577560 other upstream 1146374 25338581 ~ 25365749 (-)

Expression


Co-expression Network