LOC110531780 (bank1)


Basic Information

Item Value
gene id LOC110531780
gene name bank1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24369829 ~ 24403607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615194.2
GCTGTGACCAGAAGTGACTTTTTGCAGCAGGTTAGGAAAGtttatgtagcaggttaggaaaaggtttagggttagctaaaattaTCTCCTAACCTGCTATAAAAAGTTACTTCTGGTCGTAGTTGTACGCAATCTAGTCAAAACCCCCTAAACCTGTGCAGACCAGGTAAAGGCTAGACACTTGTCCTTACGCTCATCTGGAATTCCAGCCACCATGTActgccccatctctctgtctgatcTTGACAAGCAGGAAGCTCACAGCCCTTATCAGACCAATTGCATACAATAGAGCCAGTGTGTGGCGAGTTGTTTTTCTTTGTCAAAGTGGAGAGAGGCGGACAGAGGTGAAAAATGAGCTCAGCCGAGGACCTGCTCATCATCTATGAGGTGGAGGCAGAGCAGTGGGCTGTATACCTGCGCTCTATCTTCGCCGGGCCCAtctgggagggagggatctgttgCTACGACATCGCCACAGTGACCAGCCGGCGGGAGGACTTTCTGCGACTGGGCCAGTACAAGGTCAAGCTGTTAATCCTGTCCAGGGGAATGCTAGAGGGCCTGTGCCAGCTCCGCCGCTTCTTCCTGGCCCGGGTGCTGAGCCCCGCGGCCCACGTGGTAGTGCTTCTGTGTGGGGTAGACAGCCTGGCGCCCCTCCTGGAGGTGGTGCCCCTCAAGGGGGACGAGTGTCTGCAGGTATCCAGCGAGCAAGACGCCCATGAGTACCTGTCGGCGGTGACCGATATTGTGCAGAGAGGGCACCAGGCTGCAGCAGGGAATGTCAGTGCTGTTCCTGGGAAGTTGACGGGACCGGATCTAAAGCTGGAGTTAAACCTAAAGTTGGAGTGCAGGCAGTCTACCGGACCCTCCAGTACCAAACCCAACAACATGGTGCTGGTCCCGTCCAGAGTTCTCTGTGGGACACCAGGCGAGGTGTTCATTCTTCTAAAAGATTCTGTGGCCAGTAAAGATGCTGAGGTTGAGTTCAGTAGGAGTAAACAGAGGGTGAGAGTGAAACCTGTCCACTGGAACAAACACACCCTCTGTGTGAACGCAGCAGACTTACAAGCAGGAAGTGTGGGCGTAACACTGTACTGCAGTGGGGTGGCGATGGGAAAGGCCCATCTGCAGTACTACAGCAGCATGGAGGAGATGGCTCGCCTTCTGACCAGGGTGGCAGACCCTGTGGACTTCATGtgccagTCTCTTCAGGTGTCCTCGGTAGAGAAGCTGGACCAAAGGCTGTCCTCCATGCTGTTGGAAGCCATGCCCTCCACAGGCTTCCAGGGACTGCAGGGATATGATCCACCCGAAGGCGAGACGCTCCCAGAGGACGTGCCGTCACTTCTCCACTTTGCAGCCCAGAACGGGTTTAAAGACGTCGCCGGTGTGTTGCTACAATGTCCTGGGTCGAAAAGAGCTTTGTGCACAACTAACCGCCAAGGTCAGACACCCGCTGAGATCGCCCAACATAATGGCCACGATGAGCTCCATGTAGTGCTGCAGCAGACCCTGAATATGTTCACCGTGGGCAAGGACAGTGATGACAGCAGTATCTATGAGATGATGTGCACAGCAGGGAATCCCAGTGCTTCAGACactcagagagagaagcagggagagggggatgaggtgggggaggatgaggaggacctGTACGCCCCGCTAGGTGTAAATGATGAAGAGTATGACACCATCTTCACCTCCAGCAGCGCCGTTGTTATTGCTAACAGACCACCGGCGCCCACACCCCGGCCCGAAACTACCTCCGTCAAAGAGGACAGCACCCCCTTTATAGCTCAAGTGTTCCAGAAGAAGATGTCACAGAGCGATACTGAAACCCTGTATTCTCTACCCACTAAGCAAGCACGCGGGCGAGACAGCATCTCCTCCACGTACGACACATTTGTGCCCAACCAGCTGCCTGGGCTGGAGCAGCTGATTGAGCTGCAGGAGAAGGTGAAGAGAGGCTCTCTCAGTATGGACGAGGCTCTGGAGAGGTTCAGTGACTGGCAGAGGGTCCAGAAGGGAATGGACGCCATTCAACAGGAGAAACTACGCCAGCTGAGGGCGAGTATCATCAACAACCGAGAGGACGATGAAAGTGTCTATGatAAAATCAACATCATCCATCACACACCCAATGTGACTGTGAATGAATGTCGCAGAGGAAGCCAGCCGGTGGAGACAGACTTTTACAGCAAACCACTTAAAGGACAACATGTGCCATCAAACAAGAAACAAGACATTTAAGTTATTTGTCTTGATCTCATCCATTCGGAAGAACCAAGCACTTCTAGATAGAAATGAATGTCTGTGTCCCGCATCCCTATAAGATATCAATACATGGTAAATGTAACGTGATAAAGATGGCCATATCCATTATATGACTATGTTCATtaagttattttttttaattaaatcatTTTATTTCA
>XM_021615196.2
TGTGACCAGAAGTGACTTTTTGCAGCAGGTTAGGAAAGtttatgtagcaggttaggaaaaggtttagggttagctaaaattaTCTCCTAACCTGCTATAAAAAGTTACTTCTGGTCGTAGTTGTACGCAATCTAGTCAAAACCCCCTAAACCTGTGCAGACCAGGTAAAGGCTAGACACTTGTCCTTACGCTCATCTGGAATTCCAGCCACCATGTActgccccatctctctgtctgatcTTGACAAGCAGGAAGCTCACAGCCCTTATCAGACCAATTGCATACAATAGAGCCAGTGTGTGGCGAGTTGTTTTTCTTTGTCAAAGTGGAGAGAGGCGGACAGAGGTGAAAAATGAGCTCAGGGCACCAGGCTGCAGCAGGGAATGTCAGTGCTGTTCCTGGGAAGTTGACGGGACCGGATCTAAAGCTGGAGTTAAACCTAAAGTTGGAGTGCAGGCAGTCTACCGGACCCTCCAGTACCAAACCCAACAACATGGTGCTGGTCCCGTCCAGAGTTCTCTGTGGGACACCAGGCGAGGTGTTCATTCTTCTAAAAGATTCTGTGGCCAGTAAAGATGCTGAGGTTGAGTTCAGTAGGAGTAAACAGAGGGTGAGAGTGAAACCTGTCCACTGGAACAAACACACCCTCTGTGTGAACGCAGCAGACTTACAAGCAGGAAGTGTGGGCGTAACACTGTACTGCAGTGGGGTGGCGATGGGAAAGGCCCATCTGCAGTACTACAGCAGCATGGAGGAGATGGCTCGCCTTCTGACCAGGGTGGCAGACCCTGTGGACTTCATGtgccagTCTCTTCAGGTGTCCTCGGTAGAGAAGCTGGACCAAAGGCTGTCCTCCATGCTGTTGGAAGCCATGCCCTCCACAGGCTTCCAGGGACTGCAGGGATATGATCCACCCGAAGGCGAGACGCTCCCAGAGGACGTGCCGTCACTTCTCCACTTTGCAGCCCAGAACGGGTTTAAAGACGTCGCCGGTGTGTTGCTACAATGTCCTGGGTCGAAAAGAGCTTTGTGCACAACTAACCGCCAAGGTCAGACACCCGCTGAGATCGCCCAACATAATGGCCACGATGAGCTCCATGTAGTGCTGCAGCAGACCCTGAATATGTTCACCGTGGGCAAGGACAGTGATGACAGCAGTATCTATGAGATGATGTGCACAGCAGGGAATCCCAGTGCTTCAGACactcagagagagaagcagggagagggggatgaggtgggggaggatgaggaggacctGTACGCCCCGCTAGGTGTAAATGATGAAGAGTATGACACCATCTTCACCTCCAGCAGCGCCGTTGTTATTGCTAACAGACCACCGGCGCCCACACCCCGGCCCGAAACTACCTCCGTCAAAGAGGACAGCACCCCCTTTATAGCTCAAGTGTTCCAGAAGAAGATGTCACAGAGCGATACTGAAACCCTGTATTCTCTACCCACTAAGCAAGCACGCGGGCGAGACAGCATCTCCTCCACGTACGACACATTTGTGCCCAACCAGCTGCCTGGGCTGGAGCAGCTGATTGAGCTGCAGGAGAAGGTGAAGAGAGGCTCTCTCAGTATGGACGAGGCTCTGGAGAGGTTCAGTGACTGGCAGAGGGTCCAGAAGGGAATGGACGCCATTCAACAGGAGAAACTACGCCAGCTGAGGGCGAGTATCATCAACAACCGAGAGGACGATGAAAGTGTCTATGatAAAATCAACATCATCCATCACACACCCAATGTGACTGTGAATGAATGTCGCAGAGGAAGCCAGCCGGTGGAGACAGACTTTTACAGCAAACCACTTAAAGGACAACATGTGCCATCAAACAAGAAACAAGACATTTAAGTTATTTGTCTTGATCTCATCCATTCGGAAGAACCAAGCACTTCTAGATAGAAATGAATGTCTGTGTCCCGCATCCCTATAAGATATCAATACATGGTAAATGTAACGTGATAAAGATGGCCATATCCATTATATGACTATGTTCATtaagttattttttttaattaaatcatTTTATTTCA

Function

symbol description
bank1 Enables enzyme binding activity; signaling adaptor activity; and signaling receptor binding activity. Involved in B cell activation and positive regulation of peptidyl-tyrosine phosphorylation. Located in perinuclear region of cytoplasm. Implicated in autoimmune disease (multiple) and systemic scleroderma (multiple).

NR:

description
B-cell scaffold protein with ankyrin repeats isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615194.2 False 2438 mRNA 0.52 16 24369829 24403607
XM_021615196.2 True 2040 mRNA 0.50 15 24369831 24403607

Neighbor

gene id symbol gene type direction distance location
mllt3 LOC106577592 coding upstream 172085 24149046 ~ 24197744 (+)
hacd4 hacd4 coding upstream 282489 24077880 ~ 24087340 (+)
LOC110531767 LOC106577598 coding upstream 355992 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 382488 23976530 ~ 23987341 (+)
tspan5a LOC106577600 coding upstream 455205 23886777 ~ 23914624 (+)
LOC110531781 LOC106577736 coding downstream 53051 24456658 ~ 24484458 (+)
LOC110531785 plap coding downstream 197727 24601334 ~ 24624296 (+)
LOC110531793 LOC106577583 coding downstream 316418 24720025 ~ 24726878 (+)
LOC110531798 LOC106577580 coding downstream 332058 24735665 ~ 24770025 (+)
LOC110531796 LOC106577576 coding downstream 377260 24780867 ~ 24783674 (+)
G784437 NA non-coding upstream 91134 24276044 ~ 24278695 (+)
G784366 NA non-coding upstream 97758 24191617 ~ 24272071 (+)
G784387 NA non-coding upstream 121309 24246648 ~ 24248520 (+)
G784365 LOC103399096 non-coding upstream 161007 24207176 ~ 24208822 (+)
G784382 NA non-coding upstream 196466 24173142 ~ 24173363 (+)
G784980 NA non-coding downstream 19396 24423003 ~ 24423272 (+)
G784995 NA non-coding downstream 28348 24431955 ~ 24432190 (+)
G785021 NA non-coding downstream 43258 24446865 ~ 24447152 (+)
G785026 NA non-coding downstream 48193 24451800 ~ 24452072 (+)
G785046 NA non-coding downstream 72154 24475761 ~ 24476064 (+)
LOC110531763 LOC106577738 other upstream 530715 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 565692 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 590328 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 1261790 23105173 ~ 23111380 (+)
G785138 NA other downstream 178780 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 526744 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1124066 25525371 ~ 25532692 (+)
G786091 NA other downstream 1141624 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 1309390 25712997 ~ 25742909 (+)

Expression


Co-expression Network