LOC110531781 (LOC106577736)


Basic Information

Item Value
gene id LOC110531781
gene name LOC106577736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24456658 ~ 24484458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615198.2
CCGTAGTGTGTGCTTTGCCCAGTCTGGCGACAGCCAAATCAACAGGTAGTTTAATCTTTACATTCAAGTTTAGAGACCTGCTCTCACACTTTTAACTAGTACCCTCATTGGATATGAATGCGCCTTTCCACCTTCCAATCAACACCGTTCGGTTGTTCTACTATTACATTTCCGCATTAGTATTTAAATTCAACAAGTAAAAGATTGCAGCAGACAACCCATTAAATTGGTAGCGTTCTTTTGGTCCGTCTTCGCTATAAGGATTCTTTGGCTAAATCAGGGTACTGGAGACTGGGGCCATGTGGAAGTGCCTGTCCAAATATGTCTGCATCTTCCTCCTGCTGACCCTGTCAGGCGTCTTCTTCCTGTTCCGCAACATCAGCATTCTAGAGTGGAAGTTAGACCTATGCATCTGGGAACTATGCAGCAACCACGCAGAGGGCCCTACTCCCCTGGACCACAATCAAAGCTGTAACCACCTGAGCCAGGGCCAGGAGCGCACACCTGAGGAAGCTCTGGAGGAGCATTACCTCCTGGAGTCCATTGCCTGGCCAGAGCCTCCGCCCCGGCCCACGTCTATACCCCTGGAACAGACCAGTGACCCTGCGCACAGCCATTTTGCAGTGCTGCCAGCAGTGGGTGGGAGAGAGTGGCACGTGGGGGACCAGCTGGAGTCTCTGGTCCTTATGAAAGATTTCCAGGGACATCCCAAGAGCCATGGTGGGGACTTCTTGCTGGCTAGGCTGCACTCCCCAGAGCTGGGGGCGGGCGTTGCAGGACAGGTGTTGGACCACCAGAATGGGACCTACTCTGCCATTTTTCTGTTACTGTGGGAGGGGTCCGTACAAGTGGAGGTGACACTAGTTCATCCTAGTGAGGCAGTTGCTGTTCTACGAAACTTACGTGAAGAACGGCCCAACCGGGTGCTTTACAAGAGCCTGTTCAAATGTGGATTACTGTCTGAGACCACAATGTGTAACCTTTGTCTGCCGACCAACCAGGAGCCGCTGTGCAATTACACAGACCCCCACACGGGTGAACCCTGGTACTGTTACAAGCCTAAGCAGCTGCTGAGCTGTGACACACGGATCAACCACTTCAAGGCAGGCTACCAGAAAGATCTGATAACCGACAAAGAAGCACTGCTCTTCCAGAGTGGCGTAAACCTCAAAACACGTATTCGGGCTAAGGGGTCTGACAGTGTCACTGTGCTGCCTAAGAAGAAAGACAAACCAGAGGTGGAAAGCAGCCTTGCAAAGCCAGCGCCTGTCAGGACCACTCCCTCTGGGTATTACTTCCAAGGGTCATGGCAGTCCCTGGGTGATGTCGTGATGCGCCAGTTTAATGATCCAACTGCCATTACTCAGTGTTTGAAGGGCAAGGTGGTGTACATGTACGGAGACTCCACCGTTAGACAGTACTATGAGTTCCTCGCCAACTTCTTGCCAGagTTGAAGGATTTCAACCTTCGAAGTCCGGTGAGGGCAGGGCCCTTCATGGCGGTGGACATCCCCCACAATATTCTGCTGAAGTACCGCAGCCATGGCCCCCCCATCACCTGGACCCCTCTCAGCATCAGTCAGCTGCGCTATGTAGCTAATGAGCTGGATGGCCTGGCCGGGGGCTCAGACACTGTTGTAGTCATCAGTGTTTGGGCCCATTTCTGTACCTTCCCTGTGCAGGTTTACATTCGTCGACTCCGCCACATTCGAAGAGCGGTTGTGCGGCTTCTGAACCGGGCTCCGGGGACTGTGGTAGTGGTGCGCTCGGCAAACCTCCGGGCCCAAAGCCTAAAAGAGAGCCTCATCGTCAGTGACTGGTTTTCGGTTCAGTTGGATGGGGTGATCAAGGCCATGTTCAGGGGCCTGAATATCAAGTTAGTGGATGCCTGGGAGATGACCCTTGCCCACCACCTCCCACACAATATCCACCCGCACCCTCCGATCATTAAGAACATGATAAACACTATCCTCTCTCACGTCTGCCCAGTGAAGAAGTAGCAGAGAAATTGCATTATTTCTGGCACAATTTACAAAATAACTAGCATGGGTGGAGCGTTGTCCGACTAGGTTACATGATTCATCACTTGAGCCTGCAAAATTTTAACATCTACGAGCAAAAAGTATGTCTCAACACCATTAAGAGTCTAAATGACAATGGCATCCTACTAGCATATCTAGTGACAGAAAGATTGCCTCAAATCAACATGTAGCTTTTGTCCAGGCTGCGCTCTCCAAATTCCAAAGATTGTACAATAAATTGCGGTTTTGGTTTTATTCTTTGTACTGTACCTCTGCTTTAAAAAAGAAAGGAATTCacttttcaataaaaaaaaaagccaTTTATGGAATTTTTTCAAAGGTGTGTGTGAAACTGGTGATGTCAGTCTTTTTGTGCCCACTTTGGTTTTGGAGAAGTGTTTGACGGAAAGACACCAACCCAAGGGACACCTGCCCACGGGGCTCAAAAGTTTTAATGATAAGGTTTCGTTTTAATGATAAGGTTGTGTCCAAGTGCCCTACAGAAACAAGGGTGTGCAGATTTGTTGGCGTCATGGTTGCACCACGACTACAGCAGAAACGGCCTGCTTCTCACCCAACCAGGTCAACAATGTTTCTCTGGTAACATGGGTCAGATCATTTTTCTTCCTCTAGCGAATCTCCAGGACCGCATTTTACATTCATAAATCATGTCGTGGGCTGTTCTAAAAACTACTCATGTGTCGTTGACCATTTGTTTACActttgttcagtcatgttacatcattggctagctagctaacaaccttgTAAAGTTACAAGTATATCCAAACATTTCAgggcacagaaagaaaggaaacGGGATGGCTTCTTCAGG
>XM_021615197.2
CCGTAGTGTGTGCTTTGCCCAGTCTGGCGACAGCCAAATCAACAGGTAGTTTAATCTTTACATTCAAGTTTAGAGACCTGCTCTCACACTTTTAACTAGTACCCTCATTGGATATGAATGCGCCTTTCCACCTTCCAATCAACACCGTTCGGTTGTTCTACTATTACATTTCCGCATTAGTATTTAAATTCAACAAGTAAAAGATTGCAGCAGACAACCCATTAAATTGGTAGCGTTCTTTTGGTCCGTCTTCGCTATAAGGATTCTTTGGCTAAATCAGGGTACTGGAGACTGGGGCCATGTGGAAGTGCCTGTCCAAATATGTCTGCATCTTCCTCCTGCTGACCCTGTCAGGCGTCTTCTTCCTGTTCCGCAACATCAGCATTCTAGAGTGGAAGTTAGACCTATGCATCTGGGAACTATGCAGCAACCACGCAGAGGGCCCTACTCCCCTGGACCACAATCAAAGCTGTAACCACCTGAGCCAGGGCCAGGAGCGCACACCTGAGGAAGCTCTGGAGGAGCATTACCTCCTGGAGTCCATTGCCTGGCCAGAGCCTCCGCCCCGGCCCACGTCTATACCCCTGGAACAGACCAGTGACCCTGCGCACAGCCATTTTGCAGTGCTGCCAGCAGTGGGTGGGAGAGAGTGGCACGTGGGGGACCAGCTGGAGTCTCTGGTCCTTATGAAAGATTTCCAGGGACATCCCAAGAGCCATGGTGGGGACTTCTTGCTGGCTAGGCTGCACTCCCCAGAGCTGGGGGCGGGCGTTGCAGGACAGGTGTTGGACCACCAGAATGGGACCTACTCTGCCATTTTTCTGTTACTGTGGGAGGGGTCCGTACAAGTGGAGGTGACACTAGTTCATCCTAGTGAGGCAGTTGCTGTTCTACGAAACTTACGTGAAGAACGGCCCAACCGGGTGCTTTACAAGAGCCTGTTCAAATGTGGATTACTGTCTGAGACCACAATGTGTAACCTTTGTCTGCCGACCAACCAGGAGCCGCTGTGCAATTACACAGACCCCCACACGGGTGAACCCTGGTACTGTTACAAGCCTAAGCAGCTGCTGAGCTGTGACACACGGATCAACCACTTCAAGGCAGGCTACCAGAAAGATCTGATAACCGACAAAGAAGCACTGCTCTTCCAGAGTGGCGTAAACCTCAAAACACGTATTCGGGCTAAGGGGTCTGACAGTGTCACTGTGCTGCCTAAGAAGAAAGACAAACCAGAGGTGGAAAGCAGCCTTGCAAAGCCAGCGCCTGTCAGGACCACTCCCTCTGGGTATTACTTCCAAGGGTCATGGCAGTCCCTGGGTGATGTCGTGATGCGCCAGTTTAATGATCCAACTGCCATTACTCAGTGTTTGAAGGGCAAGGTGGTGTACATGTACGGAGACTCCACCGTTAGACAGTACTATGAGTTCCTCGCCAACTTCTTGCCAGAATTGATCAGTGTCATTATCAATACCAGTATCGGTTCAATTATCCCCTACACCCACATTTTTATAGCGTTGATCTCTCTCATCATTCGCTGCGTTGTTACAATCTTTGTTTCAATTATCCCATTGGTCCACTTTGTCATAGGTGCTGAGTGCTTCAATGACTGCCCTGTTATGTTCTTCATCCCTATCTACCTGATAGGATTGGGATGTTTTTATGTGGTCCTGGTGTTACTGTCTCTGTTTATGGCCATCAAAGACTGTCAAAGGTTCTGCTCATGGGTCATATGGATCAGTCTGCTCATTCTGATGTTCTGCCTCTTTGCTGGTAGTGGGGTTGTTTTCTCTGTATTTCAAACAACAAGCTACAACCCGACCCTCAGCGACGGGAGCTCCAACCAGACCATTGCCAACGAGAGCTACAACCATACCTTCTGCAGTGGGAGCAACAACCAGTCCATCACCAACCCAGAGTACTGCAACAAAACTCTATACCTGTTTGCATTCTCTACCTCTCTGATATGGATCCTTATGGTTGTTCTGTTAACGGTTGGCCTCAAGTTCTATGGCTGCGTCAGAATTGAGATGATCTTAAAGAGCTTGGGGTTGTGGTTGTTAGGTCATGACCCTATTTATTTGTGTTTCGGAGAGTCCACTATACAATAAGAAACAGTAGTCATACTCATATGGAGGCTATTATGAAAGGCAGCCCACAGGTGCTTtagttgattgattgttttttaaatcTTTGGGTTACATTTTTGGAGGATGAGAACATCTTCAGAGAACTTGACCAATTAAAAGTGGATAGAAAGTATTAATGGACCTGTATACCTTTTTAAATCATTTAATCTTGGAGTACTCCTTTTGTCTTTAATCGTCTTTTCAAGGCATGCCTGGTTGATTATGCCTGCTTCAAAACGATTAGAGGAAAAAGTGTTTATTTACAGTTGTGCTTTCATTCTTTGTACTCTACCTTTTTGATTCAAAATATAGCCTGTTAGAGAAATTGTTTGATAGTGTGTAAAGTGAATGGGTCATGCAGATTGACATACTTTATCACAAAAAGGGACAACCAACTACACCACCACTTTCAATCTATGCGCTTGATATCTGAccaacagatcactgaccatttcgaatcccactgtaccttctccgctgtgcaatccagtttccgagctggtcacgggtgcacctcagccaccctCAAGGTacaa
>XR_005053211.1
tccatagattttcaagtagatttaagtcaaaactgtaacttggcaactcaggaacattcactgtcttcttgAATTGATCAGTGTCATTATCAATACCAGTATCGGTTCAATTATCCCCTACACCCACATTTTTATAGCGTTGATCTCTCTCATCATTCGCTGCGTTGTTACAATCTTTGTTTCAATTATCCCATTGGTCCACTTTGTCATAGGTGCTGAGTGCTTCAATGACTGCCCTGTTATGTTCTTCATCCCTATCTACCTGATAGGATTGGGATGTTTTTATGTGGTCCTGGTGTTACTGTCTCTGTTTATGGCCATCAAAGACTGTCAAAGGTTCTGCTCATGGGTCATATGGATCAGTCTGCTCATTCTGATGTTCTGCCTCTTTGCTGGTAGTGGGGTTGTTTTCTCTGTATTTCAAACAACAAGCTACAACCCGACCCTCAGCGACGGGAGCTCCAACCAGACCATTGCCAACGAGAGCTACAACCATACCTTCTGCAGTGGGAGCAACAACCAGTCCATCACCAACCCAGAGTACTGCAACAAAACTCTATACCTGTTTGCATTCTCTACCTCTCTGATATGGATCCTTATGGTTGTTCTGTTAACGGTTGGCCTCAAGTTCTATGGCTGCGTCAGAATTGAGATGATCTTAAAGAGCTTGGGGTTGTGGTTGTTAGGTCATGACCCTATTTATTTGTGTTTCGGAGAGTCCACTATACAATAAGAAACAGTAGTCATACTCATATGGAGGCTATTATGAAAGGCAGCCCACAGGTGCTTtagttgattgattgttttttaaatcTTTG

Function

NR:

description
NXPE family member 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615198.2 False 2856 mRNA 0.49 6 24456658 24471390
XM_021615197.2 False 2665 mRNA 0.47 9 24456658 24484458
XR_005053211.1 True 818 mRNA 0.42 5 24477602 24483989

Neighbor

gene id symbol gene type direction distance location
LOC110531780 bank1 coding upstream 53051 24369829 ~ 24403607 (+)
mllt3 LOC106577592 coding upstream 258914 24149046 ~ 24197744 (+)
hacd4 hacd4 coding upstream 369318 24077880 ~ 24087340 (+)
LOC110531767 LOC106577598 coding upstream 442821 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 469317 23976530 ~ 23987341 (+)
LOC110531785 plap coding downstream 116876 24601334 ~ 24624296 (+)
LOC110531793 LOC106577583 coding downstream 235567 24720025 ~ 24726878 (+)
LOC110531798 LOC106577580 coding downstream 251207 24735665 ~ 24770025 (+)
LOC110531796 LOC106577576 coding downstream 296409 24780867 ~ 24783674 (+)
LOC110531804 NA coding downstream 310155 24794613 ~ 24795514 (+)
G785026 NA non-coding upstream 4586 24451800 ~ 24452072 (+)
G785021 NA non-coding upstream 9506 24446865 ~ 24447152 (+)
G784995 NA non-coding upstream 24468 24431955 ~ 24432190 (+)
G784980 NA non-coding upstream 33386 24423003 ~ 24423272 (+)
G784437 NA non-coding upstream 177963 24276044 ~ 24278695 (+)
G785033 NA non-coding downstream 643 24485101 ~ 24485549 (+)
G785182 NA non-coding downstream 169100 24653558 ~ 24653869 (+)
G785196 LOC100380740 non-coding downstream 220992 24705450 ~ 24771803 (+)
G785198 LOC100380740 non-coding downstream 289305 24773763 ~ 24818004 (+)
G785262 NA non-coding downstream 325256 24809714 ~ 24810262 (+)
LOC110531763 LOC106577738 other upstream 617544 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 652521 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 677157 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 1348619 23105173 ~ 23111380 (+)
G785138 NA other downstream 97929 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 445893 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1043215 25525371 ~ 25532692 (+)
G786091 NA other downstream 1060773 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 1228539 25712997 ~ 25742909 (+)

Expression


Co-expression Network